AMCG00002503


Basic Information

Item Value
gene id AMCG00002503
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16958162 ~ 16974301 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002503
GAAAGCTTCATTTCAATAGACAGGACTCTTGAAACACATGAGGAGCTTTGgagcagaaaaaatattttgtcaacCTGTCTGTAATCTATTTACAAGGTCTCTTTAATAGGATTATTTGTTCAAGGCTGCTTAGCCCCATGCTACAAGCGTTCTTCACAATAGAAGCGGAGTGGAAGGTAGCTGAGCAGGGAGTGCTGTGCTGACACTGACAGACGGCCCGGCAATGGTGAAGGACTCCAGACCATCATGGGACAACCCCATGCAATTCATCCTGGCCTGCGTGTCTTACGCGGTGGGACTGGGCAACGTCTGGCGCTTCCCTTACTTGTGCCAAATGCACGGAGGAGgtAGTTTCTTGATACCATATATGATAATGCTGGTAGTAGAAGGAATCCCCTTATTCTACATGGAGTTGGCCATCGGACAGAGGATGCGGCTGGGCAGTATTGGGGCATGGAGTTCCATAAGCCCTTATCTGGGTGGACTGGGTATTGCAAGTGTGGTGACATCAACCTATCTGGCTGTGTACTACAATGTCATAAATGCCTGGGCGTTCTGGTACCTATTTCACTCATTTCAGTCGGTGCTGCCCTGGGCAGAGTGTCCAGTGAACAGTAACCGGACTGCCTACGTTGAGGAATGTGAGAAAAGCTCTTCTACAGAGTACTTTTGGTACAGGGAGACCTTGAACATCACCTCCTCCATTGATGAGCCTGGAAGCATTCACATGGGCCAAGCACTGTGTCTCCTTTTAGCCTGGCTCATTGTCTATCTGTGTGTTGTCAAGGGAACTCAATCTACAGGAAAGGTGGTGTATTTTACTGCCACATTCCCTTACCTGGTCCTATTCATCTACTTGATCAGAGGAGTAACTCTACATGGGGCAATCAACGGAGTGAAGTACATGTTCACACCCAAGCTAACTGAGCTGACCAACCCAATGGCATGGATCAACGCAGCCACCCAGATCTTCTTCTCTCTGGGGCTGGGCTTTGGCACCCTCATTGCCTTCGCCAGCTACAACAAGCCCAACAACAACTTTGAGAAACAAGCCATCATCATCTCCATCATCAACAGTGCCACATCCATATTCGCCAGCCTGGTGACCTTCTCTATCTACGGCTTCAAAGCGACATACAGCTATGAGGACTGTTTGGAGAGGATGAAATTGCTGCTATTAAACACTTTTGAACTGGCAGAGGACTCCATAAAGGTGGACAACCTGGAATACTGGATGACTCATTTGAATACCACCTACCCAGACCAGTTTGCCTCTATATCCTCCAAGCTTGAAGTGTGTGACTTGGAGGCAGAACTGGATACGGCTGTGGAGGGCACAGGTCTGGCCTTCATCGTGTACAGCGAGGCCATCAAGAACATGGAGGTGTCCCAGCTGTGGTCCCTGCTCTACTTCTTCATGCTGCTCATGCTGGGGATAGGGAGCATGCTGGGAAACGTGGCTGCCGTCATCACCCCATTGATGGATTCGGAGTTCCTGTCCAAGCGCTTCAAAAAGGAAACGATTAACAGCATGGTGTGTCTGCTCTGCGGATTAATAGGCCTGTCTTTCACCACTGGATCGGGCAACTACTGGTTCTCCATCTTCAATGACTACGCTACCACTTTTTCCCTGCTCTTCATCGTTCTCATTGAGATCTTGAGCGTGTGCTACATCTACGGGCTGAAGCAGTTTGAAGCAGACATCGAGATGATGATCGGACATCGACCAAACTGGTACTGGAAAATAATCTGGGCAGTCGTAAGCCCACTTCTCATTATTGGACTTTTTATATTCTACATCACCAGTTACATTATGGGTGGGACACCGACATACCAAGCGTGGGATCACAACCTGGGAGAAACGATAACAAAAGAGTATCCTGTATACGCGCAGGCTTTCATCGGGATTCTCCTGGTCTCTTCCACATGCTGTGTCCCAGTGGTGGCCCTTATCACCTTCATCAAGAAGAGGGGGCAGCACAGCGAACATACAGTCAGCACCATAGCCAAAGCCTAGTCTCTTCTCAGCCACAGGGCTGCAGCTCCACAAGTGCCAGACTGGAGAGGAGGCCCGTTTGACCACATGCACCTTTACAAAGAAAGGCTGTTTCATGCACTGCACCTCTTATAACCCATTCACCTTGACCTTCCATGTGTTAAcggttttatctttttttatttgctcaTTTGTCCAAGATTACAGATTTCAAACTGGGTCTAGAACAAACTGTTGTGGTTTCTGAGGAAAACCCCCACATATTCCAGATTAGGATGTGATGCATGGATTTCTTTTGGCCATGAAAAAGGGATACTCTGTACACCGTACGCCAGAGAATatagccatgtttccgtcactcccaGTCTTCAGGAATCCCTAGATTTAGAGTCTATTTGCTAATGGTTCTCATCCGACGTGGAGATTTTCAATTTATGAATTAAACCGCACCAGAAACTAAGTGAACAATGAGATCAATGATCGGAGAACCCAAGGACAAATAAAGAGTGTCAAAACATTTGGGTTTAGATAAATAGgtgcttttttcaattttatacTGATAATGAACTAAATCACATCTCAAAACTATTTGTTACTGCAGATAAGTTTGTCTAGGCAGGTCCCGGgcattgttttgttcaaaacGAGATCGAGTACAGAATGGAGCTCTGTATTGAAGTCAGGGCTCTCCTAAACAAGCCTCTCTGAACGATGCTCAGCTGGTAAAAGATGGGAGACTGCAGAGGGCAAATCTTcaatttaagattaaataaattaaaccggCACAATTTAACAGATTAACGTAGGTTTGAGCTAGAAAATATACTACTTAATAGAACTAAAGTGTTGTAGATGATAAATATTACCATATACAATTATGACAGTAGCACAACTATATATATTAACCCAAACCTGAGGGCAGCAGCATTATAGAGACTAGTAGATACACAATCTCAAAGCACAGTCAGGTATCGAAGAGCAAATACTAACTCTGAATGTGGAGGTCATTATCTAGAGACTGCAAGGCTGTGGAGTCCAATATTTTTATGATCCTTCATAAACCAGACAACTTAGAACCACATCACAATCCAAAAAAGGACTTCATTACAATGCTCACCTTTGATGGATTAAAAATTAAGACAAAAGGTGGTTTCATtgttaaattcatattttgttgccACAGACTAAGCTGTGAATCTTTAACACTGTAGATTTAAGTCAAAATCGACTTCTTTATATTGTATGTTACATATTGAATGCAATGgactttcatatatttttaacttctgTATATCAAACTATAGAAACAAGCATCCAGTATTCAAGCATTACAAAACTTCAGAAGCAACACTCATTCtaacaaaaacagatttaattccACTAACACAAATCTGTACCAGAAATAGCCGATTTATAAGtaatataaaacagatttatgGTGCTAACACTGGCAGTTGGCTAGACTACTTTTGGCAGTCTCAAGTCAATGTTTACCCATTCTTGTGCCAAATCACAAtccaaaatgtaatgcattatcTACACTTAAAGTAACAAAACCACCTCAATTGAATAAACAACGCATCATCAGTTGGACCGGGACCTTAACTAGTCTTCCTCTATATTAACAAAAGCAGCATTCCTTTTTGAACAGTGACAtcgtattttatattaaattgatctgaagacattttaaaagatactTACCATAattggaagattttttttaagacaacttgtacattttttaaaatatctgtatgaaaatcaaataaaagtttgtttgtATACGTTTGCTGTAGCAATTATTCAGTCTCTTCAACAGACTAATGCCCCAGGCCTCTCTCCCACCCTGTTGACAGAAGGGCTGGAAACTGAAGATTGAAGACTAAGAAAATGGCTCTATAGATTAACACATTTCCAACCAATGAAGGAAGATTCATGTAAGGAGACAATAGTATCAGGAATAcggtttattatatataaaaaaaaaaaaaaaaaaattacacctcagtgtcaaaaacattttcctgtgaagtaaaaaaaaaaattcaaaaaaaCCTGTACAAACATATGCAGGAGACACGATGGCACAGCAGAGTGAATTATCTCCTGggtcctcctcttcctcttcctctgccccggcctcttcctctgcctctcccccgGCCACGGCCCGCCACTGCTTCTCTCTTTTTGGACTTGACTTTGGGCTCGATGTCCACCAGCAGGGTGTCGAGCGGCAGGCTGTCGGGCAGGATGAAGTAGCGGATGTTGTTCCCACGGATGCTCAGGGTCTCCAGCTGCACGGGCTCCCTGTTCTTCAAGGTCATCTTCACAGCCTTCAGGTGAGTGTTCATACACACATCCACACCTGTAATTGTGCCATGAACCTGGGTGCCATTCTTCAGCTCAATGGTGACCGTTTCATGGCTCAGCTTCATCAAAAATCTGTACGAGTTTCATGTTGGCAGTAGATTACGCAGAGAAATCCCCCACCAAAGTTTGGAAAAAATTACACTGGAAACGACACAGCAAGACTGAGCC
>TU154999
ACAATAGTATCAGGAATAcggtttattatatataaaaaaaaaaaaaaaaaaattacacctcagtgtcaaaaacattttcctgtgaagtaaaaaaaaaaattcaaaaaaaCCTGTACAAACATATGCAGGAGACACGATGGCACAGCAGAGTGAATTATCTCCTGggtcctcctcttcctcttcctctgccccggcctcttcctctgcctctcccccgGCCACGGCCCGCCACTGCTTCTCTCTTTTTGGACTTGACTTTGGGCTCGATGTCCACCAGCAGGGTGTCGAGCGGCAGGCTGTCGGGCAGGATGAAGTAGCGGATGTTGTTCCCACGGATGCTCAGGGTCTCCAGCTGCACGGGCTCCCTGTTCTTCAAGGTCATCTTCACAGCCTTCAGGTGAGTGTTCATACACACATCCACCTGTAATTGTGCCATGAACCTGGGTGCCATTCTTCAGCTCAATGGTGACCGTTTCATGGCTCAGCTTCATCAAAAATCTGGAAAGCAAACGAAACAATCAGCAAGgtacacaaatcacacaaatgGACCCCACAGTATGTGCGACTTGATGCATATTTAGAAggaattcagaaaaaaaaaaacaccaacatgaaCAAGTTCAGCATTGcagatacataaaaaaaagtgtgtttttgaaCAAATCCGACCTATCACCTTGTACAGAGTGAAGGGGATGCATCTGCCCAGGGAGCTCAGGCAGGACTAGTGATTGCGGAGATGTTTTGGTGAAGGCCGACGCCATTACGTCTCTAATACGTACGTGCTACGTTCACACAAGCCCAGTGCTGTGAAACTGTGCAAGAGTAACGTACAACCAGCAAATActacctcacacacacacacgatccAAGAGACCAGACATGTGCACAAAACCAGAAACAGcctcaacacaacacaatcaaGCCCAACAGTGCATCGTGCGATTATCGAGGGTAGTTTCACACCACTCGCACTGTGCTGGAATATAACGCTAGAATaacttaaatacataaatacggAGCAGGTTGTGTTTTTCGGTCGTATACGTTACGTCGCTGGGGCTTATTTGCAGGCCCTGGAGACTAGTTAAAATGTTCATTCATTCTCACTTCCCGCCTCTCGTCCTTCCTCAGACACAAAACCCTCTCTCGGATCGCAACCCCAATCTAAACTCATCCAGCGCGACCGCTCCGATCTGCTCCTTCCCCCGACGTGGACACGGGCAGGAGATGCTTTCTAATGGTCTTACCGTACGAGTTTCATGTTGGCAGTAGATTACGCAGAGAAATCCCCCACCAAAGTTTGGAAAAAATTACACTGGAAACGACACAGCAAGACTGAGCCGCTCCGGCATTAAATCAGTGAATGACCAGGAAGTGATCG

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002503 True 4540 mRNA 0.43 14 16958201 16974301
TU154999 False 1384 lncRNA 0.47 3 16958162 16960107

Neighbor

gene id symbol gene type direction distance location
AMCG00002492 tmem158,LOC102794155 coding downstream 110046 16847424 ~ 16848116 (-)
AMCG00002490 NA coding downstream 126891 16824229 ~ 16831271 (-)
AMCG00002491 zdhhc3,LOC103144443 coding downstream 144890 16792556 ~ 16813272 (-)
AMCG00002486 NA coding downstream 204666 16752548 ~ 16753496 (-)
AMCG00002488 NA coding downstream 223639 16689836 ~ 16734523 (-)
AMCG00002505 NA coding upstream 47118 17021419 ~ 17052806 (-)
AMCG00002504 NA coding upstream 89106 17063407 ~ 17071925 (-)
AMCG00002508 mturn,LOC107572558,LOC107559763 coding upstream 106203 17080504 ~ 17090314 (-)
AMCG00002509 eaf1 coding upstream 118605 17092906 ~ 17097083 (-)
AMCG00002510 capn7,LOC107705521,LOC107755679 coding upstream 162875 17137176 ~ 17158023 (-)
G123527 NA non-coding downstream 303299 16653499 ~ 16654863 (-)
G123524 stt3b,LOC108412618 non-coding downstream 306708 16648407 ~ 16651454 (-)
G123489 NA non-coding downstream 475111 16481568 ~ 16483051 (-)
G123488 NA non-coding downstream 477869 16480029 ~ 16480293 (-)
G123452 NA non-coding downstream 830757 16124282 ~ 16127405 (-)
G123637 NA non-coding upstream 6530 16980831 ~ 16982646 (-)
G123642 NA non-coding upstream 20828 16995129 ~ 17050056 (-)
G123646 NA non-coding upstream 101011 17075312 ~ 17075549 (-)
G123705 NA non-coding upstream 260069 17234370 ~ 17238544 (-)
G123788 NA non-coding upstream 685766 17660067 ~ 17675110 (-)
G123585 NA other downstream 118440 16836156 ~ 16839722 (-)
G123263 NA other downstream 2011851 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3303915 13649227 ~ 13654247 (-)
G122862 NA other downstream 3928756 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4951810 11995828 ~ 12006352 (-)
AMCG00002524 NA other upstream 715707 17690008 ~ 17706289 (-)
G123829 NA other upstream 948151 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 959163 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 4672754 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4926991 21901292 ~ 21902597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location