AMCG00002507


Basic Information

Item Value
gene id AMCG00002507
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17095736 ~ 17102119 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002507
ATGCGAGGTCAGACACACAAACCGAATGGACACAACATTCAAGCAGAGTATATTGTAGGTGTAGATGATTATTATAACCCGATGTTAAAAATGGCTCAAACTAAAGAATCCGCCGATTATGAAGACGCTTACCGTCCAAAACCTGAACATGCAGCCGAGTCTCCGTGCCCCTTGACTGACACCCTCTCCAGCTCCGCGCCCCCCCAGCAGAGACCCGGACACACGGCCAGAAGTCTGTCCCCCGAGGAAATGGAGAAACTGGAAAGAGATCAAACCACGGTGCCAGACTTCAAGCAACAAAAGCTGGAGAAGGACGCTCAGAGAAACTGGGACTTGTTCTATAAAAGAAACAGCACAAACTTTTTTAAAGACCGACACTGGACCACAAGAGAGTTTGAGGAGCTGAAAGCGTGCAGAAAGtttgatACTCAGAAGCTTATCCTGTTAGAAGCTGGCTGTGGAGTTGGAAACTGTGTCTTCCCTCTGTTGGAAGAAGATCTCAATATCTTCGTCTACGCCTGTGACTTTTCACCAAGGGCAGTAGAGTTTGTGAAAcaaaACCCCTTGTATTGTGCCGATAGATGTGAGGCATTCCAGTGTGACCTGACCAGAGACGACCTGCTGAAGAGTGTCCCGTCTCAGAGCGTGTTGAAACCTGGGGGGATCGTCTTGTTCAGGGACTACGGTCTGTACGATCACGCCATGCTCAGGTTTAAATCCGGCAGCAAGCTTGGGGAGAATTTCTACAATTGCTGGCAGATCTGTTCGTCACAGCCGGCTTTGAAACCTCGATCAATGAATATGTCCTCCGAGAGACTGTCAACAAGAAAGAGGGACTCTGTGTTCCAAGGGTATTTCTCCAGAGTAAATTTAAGAAGCCAGACTGAGAGAGGATCTGTTACCGATCCGGGTGCTGCTAGCAAAAGGAATGACCTCATTTCTGCATGAATCCTTTCAGCAGTTATTGATGCCGGTCATGCCAAAATCTCAGCTGACCACGTCCTCCTGTGGGTGTTaggatttccattttaaataaaggattttCTGTTCTTGactatgaaaaaaacaagtttaatctCTAAATCTCAGCGTTCCGTGTTTATATCTGCAACTACTCTCTGTAATTATAATGGGCAAAATCAACACTGTCGGTAATACAGGTTATCTTGGAATGAAAAAATTATCTACATTTGTTTAATCTACAAGTGACTAACGTCTATGGGCCTCTAATGCTTCCACTTAGTAACAATAATCCAtaggtttattttataatgacaCTATTATAAAATGGCTTTGAGTGATTTTCCCATTTTCCTGTTAAATAAAGGAGCAAAATAACATGTTAGCCTGACAGCAAACCATTTAATGATCACAGATggaaaacttaaacaaaataccaTAGGAGATGATGTTCGTCTAGCAATGGGTGCACTACCAAAGATACATATTAATTAAGCAAACAGAAATGCCGCACATTAGTTTGGTTGCTCCTTTGTGGCACCAGGGGGCAGCAGATCCACTCGCCAGGGTAGAAGGGGTTTTAAAAGGTGGCTTCTACTTCTATTCTAGTGAGATTTTCTGTTTTGGAGATCATTCCAAGCCTGCTTGACTTCAGCTGGTGTGATTCTTTTCAGAAGCCTCATCAAAATTCACGTGCCGTACCTTCCTCTTTTCCACCCCAtctttttcagatattttcacTTGCATTCCGTTTGATCATCAAGCGGCCTTCTGAGATCTGATGAGCACATGTTGTTTATCTCATCCCGTCAGAAATGCGAGATCAATTACATGTTTGCCAGGCTTGTGATGAAAGCACATGACAGTGAGATAAAAGGGGCACGTTTCTTATGCAGTTTGACTGTTTTCCTGAGACAGAATAAAAGGAATGTACACGCTgcaacaattttttttatccatatttaaatgtatgtatatttaatgatcTCTTGCAACAAGTCTGCTTAAATCTTTGCTGTGACTCAACACCTTTTTCACCATGGCAATGAAACAGCctcctggaaataaaataaataataaaatcac

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002507 True 2046 mRNA 0.43 6 17095736 17102119

Neighbor

gene id symbol gene type direction distance location
AMCG00002501 NA coding upstream 79490 17003048 ~ 17016246 (+)
AMCG00002502 NA coding upstream 102781 16987102 ~ 16992955 (+)
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding upstream 139166 16937361 ~ 16956570 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding upstream 162218 16925317 ~ 16933518 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding upstream 180784 16906745 ~ 16914952 (+)
AMCG00002506 sh3bp5 coding downstream 5280 17107399 ~ 17136520 (+)
AMCG00002513 NA coding downstream 102344 17204463 ~ 17248752 (+)
AMCG00002512 NA coding downstream 168462 17270581 ~ 17272452 (+)
AMCG00002517 NA coding downstream 182952 17285071 ~ 17291512 (+)
AMCG00002511 NA coding downstream 220516 17322635 ~ 17353428 (+)
G123568 NA non-coding upstream 302937 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 440852 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 443772 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 605784 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 1300587 15794408 ~ 15795149 (+)
G123659 NA non-coding downstream 35294 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 593741 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 824580 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 948893 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1402769 18504888 ~ 18509774 (+)
AMCG00002496 NA other upstream 109830 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 135654 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2734200 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3966039 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4024904 13044693 ~ 13070832 (+)
G123807 NA other downstream 813317 17915436 ~ 17984730 (+)
G123989 NA other downstream 1729895 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1971574 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 2027948 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 3139729 20241848 ~ 20333030 (+)

Expression


Co-expression Network