AMCG00002511


Basic Information

Item Value
gene id AMCG00002511
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17322635 ~ 17353428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002511
TGCATTAAAATTGAAGAagcagatatatattttttgattgaTGGCTCAAGCAGCATAAAGAATACAGACTTTTTTGAAATTAAAGACTTTATAAATGGTGTGGTTGATAACTTCAACATTGGACCTGATAGTGTGCGCATTGGAGCAGCCCAATTCTCCACAGAAGTCAGAAATGAATTTAGTGTAACTTCCCACAATAGCACAAATGATGTAAAACGGGCAATTGAAAACATCCGCCAAGATCACGGAAAAACCAAGACGGGACAGGCTCTCAAGTACATGCAGAGCTTGATGAAAAAAGAAGTAAAGGCAAAAGTAAGACAGTACCTTCTAACTGTAACTGATGGCAAGTCAGATGATGATGTGAGCGAGGTGTCAGAAACCCTCAGAAAGGATGGAGTGATCACTTATGCAGTTGGTATTGGAAAGGCAAATATAACAGAGCTTGAAACGATTGCAGGTTTCAAAAATAGGTCCTTCTACACCACACAATTTGATTTCCTTAAGGATATAAAAAACGAAGTGACTCGGGAAATCTGTTTAGAAGAGGCCTGCAAGAAAAGTGAAGCAGATATAGTGTTCTTAATTGACAGTTCTGGGAGCATTAATCCCACAGACTACACCAGCATGAAACATTTCATGACATCAATTGTAAACAAATCAGACATTGGGAGAGACAAAGTACGTATTGGTGCAATGCAATACAGCTATAAAGTGCAACCTGAATTTGAATTGGATAAACATGTCCAGGCACCTGACTTACTGCAAGCCATTGACAACATGCTTCAACTGGGTGGCGGAACTTTGACTGGAGAAGCCCTTAAATCGGTCTCTAACTATTTCAAAAAAGCACGCCCCAATGTCAACCGCATCCTCATTGTGATAACTGATGGTGAGGCTCAAGATGAAGTTTTACAACCTGCTAAGGATTTGCGAGAAAAAGGCATAACTATTTTTTCTATTGGTGTTTTTGGTGCCAATTACTCTCAACTGGAGGAAATAAGCGGCTCTcgccaaaacattttttttatcaacaaaTTTGAAGAGCTCAATAGTATACTGGACAAGGTGCTTTTCAGTGTATGCAATCCCTTTAAAGaGTGCCGTAAAATAAACGTTGCCGATATAATGTTTGTCATAGACACATCTGGAAGTATTCCTTCAGAGGGATTTCAAAGTATGAAGGATTTCATGTATGCCATGGTAAAGAACTCTGACATTGGGAAAGACAGGGTACAGATTGGGGCAACACAATATAGTGACGATCCTCGGAGAGcctttgatttaaatgaaaaccatgacAAGAGGTCACTGGAGCAGGCCATCAAAGCAATGCATCTCTTCGGGggaaacacatacacagcaaAAGCTCTCAATTTTTCCAAAGACCGTCTGGCAGAATCGTTTGGTGGGCGCAAAGCAAGAGGTGTTCCACAGATTCTAATCACAGTGACTGATGGAGAATCTCATGACAGGGAGCTCTTGAATGTAACGTCCCAGTACATCAGAAACTCTGGTATTATTACTTATGCTATTGGAATAAAGGATGCAAAGAAAGAGGAACTCCTGGCAATTGGGGGGTCTAATGATAAGTACTTCTATGTGGATAATTTTGATAAATTAAAAGAGATTGAACAGAGGATTTCTGAAGTCATCTGTAATTGCGAAAGAGATGAAGCAGAAATGGTCTTCTTAATTGACGGCTCTAGCAGCATCTCACAATCTGACTTCAGAATCATGAAGAGCTTCACAAAAAACATGACGGACATTTTTGACATCAGCAAAGGAAAAGTACAAATTGGTCTATCTCAATACAGTGATAAATACCAGAAAGAGTTTGATCTCAAGGAATTCACGGACAAAGTAACAATTCACAGTGAAATAGACAAAATTAATCAACTCTTTGGAAACACACTCATAGGAAAGGCTCTTGAACATGCAAAGGAATTTTTCAAGACACCTACTGGTAGCTGGCGAACTGCTAAAGTGGCACAGATTTTGATTGTAATAACAGATGGAGAATCACAAGATGACGTTTCAGTGGCAGCTCAAGATCTCCGAAATCAAAATATAGACATTTATGCAGTGGGTGTAGGTAAATTTAATGACCAACAGATGTCGCAGATTGCTGGAGATAACGACAGAGTGTTCAAAGTGGAAAAATTTGATGAGCTTCAGCATCTTAAAAAGAGGGTTGCCAGAAATATATGCCCTGAGAAACATGAACGCTCAAACTGCAGTGTAGACATTGCTGTGGGTATTGACATTTCCAAGCAACCAGCAGGAACATCCTTATTCTCTGCTCAGCACCATCTCGAAGTGTTCCTCCATAATATAATCAGGAAAATTAACTCTCTTGAGAAGGTCAGCTGTACTCCCAAATCACAACTACAGATCAGCTTTGGCTTTGAACTTAATAATGTAGAAAATACATACCAGACCACATTCAAAGAGTGTAAAGATGATGACATTGTGAACAAACTGAAGACACTAAAGATCCGTGAGCCCTCTAAGCTCAACACAGCGTACCTACAGTCATTCTGGGAGAAGTTCACCCGCGAATCGGACGCAACTACGAAGggCCGTGTAGGCTGGCCAGGACCCCCGGGCCATCCAGGGGAAGAAGGGACACCTGGAACACGTGGGCCTCCGGGGCCTGCTGGCTCACCTGGTTCAATTGGGGAGTCAGGGGTAGCCAAGGTGAAAACGGAGAACACGGAGAAGACGGACTGGATGGAGTCACAGGCGAACAggGTTCTTATGGTGCAAAAGGTTCAGTTGGAGACAGGGGGGAGCCAGGCATACGAGGAGACCCAGGGCTTCCTGGAACTGATAACAACAAccctggccttgaaggagagaAGGGTAAACCTGGCCCCCCGGGAGATTTTGGTGTGGATGGCAAACCTGGAACTGGAGGCCCTCCAGGACGAAAAggaTCTAATGGAGTCGTTGGTGATAATGGTCCACAAGGAGAGTCTGGTATTAAAGGACCGCAGGGCTCTCAAGGAACTATTGGCACAAAGGGAAGTAGAGGGAATCCTGGGTGAGCCAGGAGACCCTGGTGTAAAAGGAGAGATTGGTCCCATTGGCCCCCGAGGGACACAGGGAGAAGATGGTAGGGATGGATTTGGAAAACCAGGAgtcaaagggaaaaaaGGAGAATTTGGAGAAAACGGCATTAAAGGAGAAATGGGACAAAAGGGCAATCGAGGAAGAAGAGGCTCGGGGGGGCCTCCTGGTGAACCCGGCATTCCAGGTTCCAATGGACCGTTTGGACGCAAGGAGTGTCAGCTTCTCAGTTACCTACGCTCTTACTGTGACAGGGTTGGTTGCCCAAAATATCCTATTGAAGTAGTGTTTGCCCTGGATATGTCTGCTGGCGTGACACAGCAATTGTTCAACAGAATGAAGAACATAGTTTCTCTAATGGTAAATGACATAAACATCAGCGAAAGCAACTGCCCAATAAATGCACGAGTAGCGGTGTTATCCTACAATTCCAACGTGAATCATCTGATCCGCTTTGTGGACCATCGCAAGAAGAAACACCTACTGGAGGCCGTGAAAAGTATTGGCTTTACACGGTCCTCTAATGCACGGGACCTTGGTGCGGCCATGAGGTACATTGCAAGGAATCACTTCAAGCGCACGCGTCATGGATCTCTGGTTAAGAAGATGGCCTTTATCCTGAACAATGGACCGTCCAAAGACTTGGAATCCATAAATACTGGCCTTCTAGAATTAGGTGCAAATGACATCGCCACAGTACTCATTGCTCCTGCCGACCTTCCCAAACTCTCTGCTGCTTTTTCGATTGACCGTAGCAAGTTTGAGTTTGTCACCATAAAAGATTTTCAGAACCCAAACAAGACTTTGTCCAGATTGCAAAGGTGTTATTTTTGCTATGATTTTTGCAATCCAGATTCAGAATGCAGACGACAGCCACAAGATATCCCTATGGCCAGCCCTATTGCCAGCCAGGATATGGATGTAGCTTTTTTTATCGACAACTCCAAAGGAATGAATTGGCATAAAACTAGAATCTTTCTCCAATCACTGATGGAtaattttttattcaaaactgaCCCAAGGACCTTCGAAACCAAAACAAGAGTGGCCCTTGCCATGCGTGGTGAAAGATGGGACCAAAACCCCGTATCAGTGAAATTTGATTTCAAAGAGGAATTGACCTTCAATGCAATTAATAGGAATATGATAAACTTGGAGTACAGGGAAGGCTCTTCTGGGATTGGACAGTCTTTGGAGTGGATGTTGACCAATCTGTTCGGAAAGCTGTCCCAACCCAAAACCACCAAAGTGATCTTTTTAATTCTCAGTGAGAAGACTGAGACTTGGGACCAGAAGAAACTGTCTGAAATGGCTCTCAAGGCCAAGTGTAAAGGGTTTGTACTTTTTGCATTGGTACTTGGGAAAGGTATCAATGACATGGAGGTGGAGGAGCTAGCTAGTCTTCCTGTCAGTCAGCATTCTTGTCAACTGGGAAGTATTACTGAGCCTGACATGGATTACGCACTGAGGTTTTCACTGACTTTCTTCAACCAGCTAACAAAGAAGTTCAATGCTTATCCTCATAAAGATCTTCAAACAAAGTGTAAACAAATTGATAACCTGGGGGTGGTTCAAGACGATGATGGACAACTAATGGCTGATGAAAGATTTCCAACTTTGACCATGAATGCAAAGACTGAAGAACCACTGAATTTAATTCAAACAGAACCTGAAACAAACCCAGAACCTATCAAGGAGGAAACACGTGTTCAGGATCCTGAGAAGATCAGTCTAGACGACAGGCAGACCATAAAACCCATTTCACATCTCTCTAAAAATCGCTGTCTACAGCAGAGAGACCATGGCAAATCATGCAGTGGATCCCAAAGGATAAGATGGTTTTATAACAAAGCCACCAACACCTGCCTCCCATTCAGGTTTGGTGGCTGTGGTGGTAATGGCAATAGATTTATGACAAAAAAATGGTGTCTTCACATATGTGCTTCGTAAAGTATGTATGACAAAACGGTGAATTATAAGAACGGGTGCTGGGTTAggttttgttataaaaaaaaaattgtagaaAGTCTTACTTAACAAGAACCCAAGTAAAAAATGCAAGTTTTAAGatttgaagagaaaaaataattgaatgacaTTGGTTTGTCTCCATATTAAAAACCTTTTACATATGCTATCACAGTGTAGGACTGAGAATTAGtagtattttaatgaacaaaaaaaacctcatgtatcattttataaatgtaaaggGATTTCCTGTGTTTGTATagtttaatactgtattttcatttttattagtCTTTTAGTCATCATTTAAAGGTTACACTTCTGTAAGGCATTACAGTAATTCATAAACTCATATTaactcttttctgtttttctaaatgATAAACACTGAGGCAACTTATGTTACTGTTGCTTCTAGCATAAAAAGGGAATCATtcagtcaattaaaaacaaaaattgtgaCCGGGagatttttatttctaatgcaagaatattattttcacatgtgTCTTGGGAGGGTAGTACAGATTTggtcaaacaaaaacattctgcTTAGTCAAGTTTCTCTCCATTATAATTAGTTGTAAGCTGGAGATGAGACGAGGTGCTGTACAATATACTGATAATGTGGGTTGGTGAAATTATACCTGAGCCTTAAATTCAATATCGCTGGCTAcatatttacagtgtatttgcTGTGTCCCAGAGTTATAAGCCTCTGTatctaaattaaattcaagTTTGACTCTTCTTAGCTGTGTACAACCCTTCAGTCAGTGACTATATAATACAGCTGTCTTGAGTCACCGCTCATCTCCTTTCTTTGGCATAACTGTGCAGAATCTGGAACAAATCTTGTATTAAACCATCTGATACACCTATTCTGTGGCCTGTATTCTAATATAAGGTGGTACTATAACAGTGTGCTTTTCTATACATGGTGCTAATGTACACTGTGAGATTTGGGTGTTGTCCACTTCAGTGTGAAGGAAATATACCTGTATAACTGCTACTACAGTACTTTCCATTGGAGTCCTCAAGGGGGCAATAGGTCAAATGGGTGTGACCTGGAACTTAGACTACCTGAAGTATACTGGGGCAATACAGGTTTTACCATGacaattaatgtttgtttgagGAAGAGGAATTAGCTAGATTTGAGATATGGACCCATCTGATAGGACTTATTTTCATAAgttaaaggaataaaaaagcATTGATATCTAGCGGGGTTTGGACAATAGgcttaaattgaaattttaGTCCTAGAGGCTCATAAAGGGGATTTAGTACAAAGCCTCTGCTGGGAAACAAGTATATGGGTCAAGTAGCTTGGAGTTTGCTGGATAAAATCTATTCTGGGCCACATGCCGAAGAGGGTAAGGACCATCTACTGACAGCCTGCAGTTTGTGAAGCAATTTTTTGGGCCTTCCCGAGAAGTGAAGCCTGCATTTCTTGAGACTTTTTGCTGGAGTGGTTTTTGGCCTCCATGACACCGAACTGTTCCCAGAGGCAGTGTGGGGGACGAATGGAATGGAATCTTGAATCATTATCAGACAGAATGTTTGTATGCTATTGTCACATAAAGTTTACTTGGAAATAATTCCACATCCTAAAACACCAAATTGAACAAgtctttacttttttaattgtgctgatatgtttttgaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002511 True 6715 mRNA 0.41 25 17322635 17353428

Neighbor

gene id symbol gene type direction distance location
AMCG00002517 NA coding upstream 31123 17285071 ~ 17291512 (+)
AMCG00002512 NA coding upstream 50183 17270581 ~ 17272452 (+)
AMCG00002513 NA coding upstream 73883 17204463 ~ 17248752 (+)
AMCG00002506 sh3bp5 coding upstream 186115 17107399 ~ 17136520 (+)
AMCG00002507 NA coding upstream 220516 17095736 ~ 17102119 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding downstream 36517 17389945 ~ 17415896 (+)
AMCG00002529 NA coding downstream 92492 17445920 ~ 17471292 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding downstream 299047 17652475 ~ 17661173 (+)
AMCG00002525 NA coding downstream 308451 17661879 ~ 17675110 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding downstream 453307 17806735 ~ 17811727 (+)
G123653 NA non-coding upstream 174299 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 181200 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 529836 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 667751 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 670671 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 342432 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 573271 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 697584 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1151460 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 1201057 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 336729 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 362553 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2961099 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4192938 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4251803 13044693 ~ 13070832 (+)
G123807 NA other downstream 562008 17915436 ~ 17984730 (+)
G123989 NA other downstream 1478586 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1720265 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1776639 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2888420 20241848 ~ 20333030 (+)

Expression


Co-expression Network