AMCG00002513


Basic Information

Item Value
gene id AMCG00002513
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17204463 ~ 17248752 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002513
GAACAGTGACTTCAAATCTTTTTCATCATGGCGATGATGAAAAGATTTTTAGCGGTTTGGTTTTTCACAACCTGTCTTCGCCTGAATGATGCTCAGAAAACTGTTTGCACAGAAGAAGCTCTCGCTGACATTGTCATCCTGGTTGACGGGTCTTGGAGTATTGGAACGGACAACTTCCAGAAGATGCGAGAGTTTCTCTACACCCTGATAGACAGCTTTGACGTGGCACCAGATCAAGTGCGGATCGGGCTCATTCAGTACAGCAACAGCCCCCGTACAGAGTTCACCCTCAACaagtacaacaacaaacaagacaTTCTGCAATACATCCAGACCCTTCCTTACAAAGGCGGGGGCACAAAGACTGGTCTAGGTCTCGACTTCATGCTGAAGAACCACTTTACCCAGGAATCTGGGAGCAGAGCTGCTGAAGGAGTTCCTCAGGTTGCCATCGTCATCACGGACGGACAATCACAGGACACTGTCAAACTGGCTGCCGACGAAGTTAAAAACAGCGGCATTAGCCTGTACGCCATTGGCATAAAAGATGCAGTGCTGGAAGAGCTTAAGGAGATCGCCAGCGACCCTGATGACACGTATGTGTACAATGTGGATGACTTTGCAGCTCTACAGGGCGTCTCCAAGAACATTGTTCAGGTTCTTTGCACCACTGTGGAGGAGGCGACTCGGCAGATCGTTCAAGTTTCTAAAGAATGCAGGAAGGccactgctgattttgtatttctGGTGGATTCCTCAACCAGCATTGGTGAGACAGACTTTGAACAAGTGAGAGACTTTCTTTACAACTTTGTGGACGGTCTGGAAATCGGTGTGAACAAGGTCCGTGTGGGCCTAGCGCAGTACAGTGATGAAGTTCACCAGGAGTTCCTGTTGTCGCAGTACAGCACCAAAAAGCCCATGCTGGATTATATACAGAACCTGGTTTACAGAACAGGCAGCACTTACACGGGAAAGGCTTTGGAGTTCATTAAGACCCAGTATTTTACAGAAGCAGCCGGCAGCAGGGCCAATAAAGGGGTTCCACAGATTGCCATCGTCATCACTGATGGGGAATCTGCTGACAAAGTAATTGAACCGGCCAGAGAGCTCAGGCAACTTGGGGTCACTATCTTTGTGATTGGCATTGGCACCGCTGACTACAAAGAGCTTCAGGAAATTGCAAACAGGCCCACGGACAATTACCTCTTCAATATTGTCAACTTTGAAGCTCTTCAACAACTAACTGAAAGGCTGTTGCCAATTGTGTGCTCTGACGTGGAAACCCAGACGCAAGCTTTAGCTCCCAGCTTTGCAGATATAGTGTTTCTGGTTGATGGCTCAACAGCTTTGGGAGCCCAAGCTTTTCagcaaattaaaactttcatcAAGGAAGTCGTGATTCAACTGGATGTCGGCATTGACGAGCATCGGATTGGCCTGGCCCAGTTCAGCggggacacaaacacagagttcCTGCTGAACGCCTATCAGAAGAAGCaaggcattttaaattacttaaacaaCCGTTTCAAACTCAAAGGTGGCGAGAACCGAATTGGGCAAGCCCTAGAGTATGTACGTCTTAACTTTTTCACAGAGGCTGCGGGCAGTCGAATTTCCCAGGGCTATCGTCAGTTTCTCGTGGTTCTCACCTCTGCAAAATCTGAAGACAAGATCCAGAGAGCTGCACGGGCCAtgaagagagagggggtgacAGTGATTTCAATTGGGCTGCTCAACTCACTCAAAGCAGAGTTGGAAATTATGGCAACAAAGCCATATATATACCAACTGGATAAACTGCAGAGGTTAAACCAGATTCCTGAAGAAGTAACAGGGATTATTGAATCAAGAGAAGCATGGCTGAACTTATCCACTGGGCCAGCAGTGTGTAAATCGGCCATTATGGCTGATATTGTATTCGTTGTGGATGAGTCTAGCAGTGTTAACCCAACAAACTTCCAGCTGGTCCGAAGTTTCATCCATAAGGTTGTTGCCGGTCTAGATATTGGCTTCAACAAAGTGAGGATTGGCGTGGTCATGTACAGCAATACTCCCAAAGCAGAAGCTTTCCTGAATTCTTTCAATGATAAGAATGAAATTctgcaatatattaaaaaactgcCTTACCGCGGAGGGGGTACAGCAACAGGAGCTGCATTGGACTTTGTGAgaacaaatatattcaaaaaagaaaagggaagcCGTAAGGCCCAAGGTGTGCAGCAGATTGCCATTGTGATCACAGATGGTGAGTCTCAGGACAACGTGAGCAGCCCAGCAAACAACCTTCGACGAGCAGGCGTAACCGTCTTTGCTGTAGGAGTCAAGGGCGCAAATGAGCAGGAGCTAAGGAAGATTGCTTCCCATCCTCCCAGgaagtttgttttcaatgttgaCAGTTTCGCAAAGCTTTCCAATCTGGACAAGAGACTTCAAAAGCTCCTGTGCAGTGAAATCATAGAGATCTCCTTTGCCGTACCACAACTGACATATGTGATTAAAGAAGGTTGTGTGGATACAGAAGAGGcagacatttactttttaatagatCACTCTGGCAGCATTGAGCATACAGACTTCTTGGACATGAAGAAATTCATCAAAGAGATGATTGACATGTTCAGAATTGAACAACAAGGGGTTCGGATTGGGGTTGTGAAGTACTCTGACACACCCACTTTAGAGTTTAAACTCACACAATACTATGACAAGAAAGCTTTACGGAGAGCAGTGGACAACGTTTTACAGTTGGGAGGGGGAACCCGAACGGGAGATGCATTGAAGTCGATGAGCGCTCTTTTCAGTGAGGCTAAGGACAGCCGCAGTGACACGGTCCCTCAGATCCTCATCAGCATCACAGACGGGAAGTCCCAAGATGAAGTTTTGCAAGCCGCCAAGAACCTCAGGGCAGAAGGCATCACCATTTATGCCATAGGTGTGGGAAACGCAGATGAGGCAGAGCTCTTGGAGATCGCAGGGTCACCTGAGAAGAAGTTTTACGTTAACAGTTTTGACTCTTTGAGACTCATTAAGAACGAGGTGGTCCGAGACATTTGCTCTAATGAAGCATGTAAGCACATGGAAGCAGATATCCTTTTCCTGATTGACAGCTCAGGAAGCATTGAGGCAGAAGATTTCTCTAAGATGAAAAATTTCATGGAGTCAATGATTGAGAGATCTGACATCGGTTCAGACAGAGTCCAGGTTGGTGTTCTGCAGTTCAGCAGCACCCCAATAGAGGAGTTTCCGCTCGACCGATTTGATGACAAGGCTGGCATAAAGCAAGCAATTAATGATATGCAACAAACAGGTGGTGGCACGAATACTGGAGCAGCCCTGACATTTTCATCCCCGTACTTTGACAGTCCAAGAGGTGGGCGATCACATGTCAAACAGTTCTTGATCGTTATCACGGATGGGGAAGCTCAAGATGAGGTTGCCAAGCCAGCGAAGGCCCTGCGAGACAAGGGAATAATCATCTACACCATTGGTGTTCTGAATGCCAACAACACTCAACTTGTGGAAATCAGCGGTTCACAGGACAGAGTTTTCCCTGCAGAGAACTTTGATGGCCTAAAGTTTTTGGAGAAGCGTATACTATTTCAGATCTGCAGTCCAGAGACTGGTGaTTGTAAGAGATCAGAAGTAGCTGACCTGATTTTTATGGTGGATGGCTCAGGCAGCATAAGCAAGGATCAGTTTCAGAGCATGAAGAGGTTCATGTCGTCCTTGGTGAACAGTTCTGATGTTGGTGAACACAATGTTCGATTTGGAGCAGTAGTATACTCTGACTACGCAAAAACAgcattccatttaaataaattctaCAACAAACGAGGGGTGCTGCAAGCCATTGACAATCTGCAGAAAACGGGATTGCAGACATACACAGCCAGAGCCCTCCAGCACTCTCAGTTTGAATTTTCTGAAGACAATGGCGGCCGCAAGTCTTCTCAAATCCCCCAGATTCTGATGGTCATTACTGATGGTAAAGCTTCAGACCATATTGCCCTTCCGGTTTGGTCAAAGACATTGAGGAATGAGGAAATCAGCATTTACAGTATTGGGGTGGGAGATGCATCAATGGAAGAACTGACTACCATGGCAGGGGATGCCAGTAAAGTCTTCTATGTGGACAACTATGCAGCTCTTGAAGAACTGCACAGAAATATCTCTCAGATGATCTGTGCTGAAACCAAACCAGTATGTGAAACCCAACAATCAGACATTGTAATGTTGATTGATGGATCAGGCAGCATCATAGGAGAAGAATTCAAGAAAATGCAAGACTTCATGTCAGAGCTGGCCAGCAGTTTTAAAGTCAGCGAGAACAGCGTGAGGATTGGTGTTGCACAATTTAGCACTGACCCTCAGAAAGAATTCTACCTCAATGAATTTCATACACAACCCGACGTAAGGAAAGAAATTCtcaaaatacagcaaattaAGGGATCGACCTTCATCGGTAAAGCTCTGTCGTTCATTCGCTCGTACTTTGAGCCCTCTGCAGGAAGTAGGATCAATCAGCTGATACCCCAGAATCTCATTGTGATCACCGATGGAGATTCCCAAGATGAGGTAGCAGAGGCAGCAGCGACATTGAGAGCTTTGAAAATCAACATCTTTGTCATTGGTGTGGGACATGTTCAACCTTTTCAACTTCTGCAGATTGCGGGTTCAAGTGATAGGCTTTTCACAATACAAAACTTTGCAGAACTCCAGAGGATAAAGACAAAAGTGGTCAATACCATATGTGAACAGAAAGATTCACCTGAGACCAGCTGTTCGATTGATGTGGCTGTTGGATTTGACATCTCCAGAAGGACCAGATTTCAAGGGCTGTTCAGCGGACAGCAGAAACTGCAAGTCTACCTCCCTGAAATAATCAGACGAATATCTAATTTGGGAGATCTCAGCTGTTGTACGGGGGCAAGAATCAGTATACAGATTGGCTTCCATGTAGCCACAGAAGACGGACAGATTATTTTTGATTCCAAGTTTGAGAAATACAATGAGGACATCATTAAAAAGCTGATGGCACTGCAGACCAAAGAAGTGACATACTTCAACACTAAGTTTTTGCAGTCCTTTTTGACAAAATTTCAGAAAGAATCAAGAGCCAAtgtacagGCACTGCTAATATTCTCTGATGGACTAGATGATGTCATTGAGAATCTCGAGTTTGAATCGGAGGACCTCAGAAGACGAGGTATCAATGCGTTGCTGGCTGTGGCATTGGAAGGCGTCACTAATGCAAACGACATGCAGATGGTTGAGTTTGGAAGAGGTTTTGGCTACAAAGTGCCCCTCACCATCGGAATGCAGGAAGTAGCTAGTTCTATGTTTAAAGAGCTTGACACCGTTGCGGAGAGAGAgtgctgtaatgtaatgtgcaaATGTACCGGCCCGGAAGGACTGCGTGGTCCCAGAGGATCCCCGGGAACAAAGggaTCTATAGGTCCAAAAGGATCTCCTGGACATCCTGGCGAAGAAGGAGGAATTGGTGAAAGGGGTCCTCCTGGTTTGAACGGCACTCAGGGTATCCAAGGATGTCCTGGAAAAAGAGGCACCAAAgGACTGAGAGGCTACAGGGGCAATAGGGGGGAGGATGGGGATGATGGGATTGACGGAGTGGATGGCGAAAAGggAGATTCTGGCAAGGATAACTTTGTGCGTGGGCCAAAAGGCGAGAGAGGAAACCCTGGGATACAGGGTGATGCCGGAAGGGACGGCCTGCCAGGTGACGCTGGTAGCCCTGGGAACAGAGTCGAAGAGGTCTCTCTGGAAATAAGgGGGAAAGAGGAGAGGGGGGATCGCAAGGCTTGGCAGGAGATCCTGGGCCCAGTGGTCCTCAGgGAGAACCAGGACTGCAAGGCCTTAAGGGAACGAAGGGGAGTCTTGGACAAAAGGGACAGAAGGGTCAGCCTGGAGACTTTGGGGTTAGAGGATCTTTTGGACCGCCTGGGCCGAGAGGATTGCCAGGAACTGATGGCAGAGATGGTTATGGGTCACCTGGGGACAAAGGACAGAAGGGAGAGCCAGGATTCCCAGGTTACCCAGGGACCCAGGGAGAGGAAGGTACACCTGGAGTCACTGGCAGCAGAGGTACCAAAGGGGTTCGTGGGAGACGGGGTAATACTGGCAGGACAGGGAACACCGGGGACCCAGGCAGTCCCGGACCTGCTGGCCCCATGggtgTTAAAGGACCGACCTTGTGAGCTTGTCACCTATGTCCGTGACAACTGCCGGAGGACCGATTGCCCTGCGTACCCCACAGAGCTAGTGCTCGCCTTCGATATGTCTGAGGACGTTTCTTCACCAGTCTTTGAGAGAATGCGAAAGGTCGCCCTAAAGCTTTTGGAGGACATCAGCATCGCAGAAAGCAACTGTCCCACCGGAGCCCGGGTAGCGGTCCTGTCCTACAGCTCCACCACAAAGTATCTGATACGCTTCTCGGACTATCACCGCAAGAAGCACCTGATAGAAGCAATAAAGAACATTCCCCATGAGAGGACGTCTAACCGCCGCAACATCGGGGCAGCTATGAGATTTGTGGCCAGGAATGTGTTCAAGCGAACCCGCCAGGGCGTGCTGATGAGGAAGGTAGCCCTGTTCATCTCCAATGGGGCGTCTCAAGAGGCCACACCCATCACCACAGCTGTGATGGAGTTCAAGGCTCTGGACATCACCCCTGCGGTCATCGCATTCAAGGATGTTCCAAATGTCAAGCGTGCTTTTAGGGCTGATGAAACTGGAAGTTACTTAGTGTCTGTTCTGGATAGAACACAGGCTCAGGATTCGGAGATCCAGAGAATTCTGCAGTGCACGATCTGCTATGATGTGTGCAGTCCATCCACAGAATGCCCGAACATCAACTTTGTTCCAACTCCAGTGCAAATGGACATGGACCTGGCTTTAGTGGTAGATGGTTCAAGGAATATGGGGACAGACCAGTACGAAGGGGTTAAACAACTTCTGAGCTCTGTTGTGGATCAGATTGCCATTAGTAGCCAGCCAGGGACATCAGCCAAAGGAGCTAGAGTGGCTCTAGTTCAGCACAGTCCTTTGAGCTACCCTCCAAGATCAGGCCAGAAAGCAGTCACACTTGAGTTTGACCTCCAGCAATATAAGAACAAGATGGTAATGAAAAGGCATATTCAAGAGAACATGCAACAAATAGGGGGCTCCTCCAGTGTCGGCCATGCAGTCGAATGGGTGATCAACAATATCCTGCTCAAAGCCCCAGGACACAAGAGGACACAGGTCATTATCACAGTTCTTGGAGGGGAGACGAGCTATTGGGACCGAGCCAAACTGAACTACATATCTCTGGTAGCTAAGTGTCAGGGTATTGCTTTATTCACCCTTTCAGCAGGAAATGAATTCAATGACACACAATTAGAAGAGATTTCAAGCTTCCCCCTGGAACAGCACCTGGTACACTTGGGTCAAGTCAAGCACGGTGAAATAGAATACACACAGCGGTTCATTCGAGCCTTCTTCAGCATTCTAAAGAATGGAATCAACCGCTATCCGCCAGCAACCCTTCAAAGGGAATGTGACGATATCCAGGCACTGATCCCGGAAGGGGAATCATTGCAAGGCCTTCCAGTAGAAAGCATCCCAGTTAAAACTCCAGCTCCAGAAGAAGAATATTACAGTTACACAGAGGAGACTGGAACCATAACAGAGGAGCCGGAAGAAGAGATCACAGAGGAACCTGACATTCAAGGGGAGAAGAAGATATACAATTATgaagtggaggaagaggaggatgaagagcTAAGAGAAGGGGTTGAAGAATATACAGAAGAAGTGGGCTATGGTGGAAGTGAAGGCAGAGGAGATGCAAaACCAGTTACAGACACCCAACAGAAGGAACTTCAAAGTCAAGTCGTGTGCCGTCTCACATTAGATGAGGGAGACTGCCGGAACTTCACCCTTAAATGGCACTTCGATGCTGAGCAAAACCTGTGCTTGAGGTTTTGGTACGGTGGCTGCGGCGGAAACCAGAACAAATTTGAAACCCAGGAGGACTGTGAAAGCCTCTGTCTTAACTCTGTCTGCAAAAAGGAGACTGTAGCAGACATTGTATTTTTGGTGGATGGATCAAAGAGTATTGGGAGTGATAACTTCCAGGAGATCCGTGACTTCCTCCACACCCTCATAGACAGCTTTGACGTGGGGCCACAGAAAGTGTGTATCGGGCTCATTCTGTACAGTACTTCTGCCAGTACAGAGTTTACCCTCAACaagtacaacaacaaacaaaacattatgcGATACATCCAGACCCTTCTTTACAAAGGCGGGGGCACAAATACTGGTCTAGGCCTCGACTTCATGCTGAAGAACCACTTTACCCAGGAATCTGGGAGCAGAGCTGCTGAAGGAGTTCCTCAGGTTGCCATCGTCATCACGGATGGACAATCACAGGACAATGTCACAGGACCAGCTCAAGCGATTAAAAACAGGGGCATTAGCCTGTACGCCATTGGCATAAAAGATGCGGTGCTGGGAGAGCTAAAGGAAATTGCCAGCGACCCTGATGACACATATGTGTACAATGTGGATGACTTTGCCGCGCTGCAGGGTATCTCGAAGAACATTGTTCAGGTTCTTTGCAGCACTGTGGAGGAGGAGACTCGGCAGATCGTTCAAATATCCAAAAGATGCAGGAAAACAGAAGTGGCAGACATGTACTTTTTAATTGATCATTCTGGAAGTATTAATCCTAAAGACTTCTTGGACATGAAGAAATTCATCAGTGAGATGCATTGGTCCCGAAAATGTTCGGGGATCGGggttgtgaaatactcagagtACCCTACTTTAGAGTTTGACCTCACAGTGCACTCTAGTAAGGAAACTTTACAGAGTGCAGTGACGAGGATTTTACATCAGGGAGGTGGAACCCAAACAGGAGTTGCATTGAAATCAATGAGTGGGCATTTCAGAGAGGCCGCGGCCAGCCGCAGTGCCACGGTCCCTCAGATCCTCATCAGCATCACAGATGGGAAGTCCCGGGATGAGGTCATGGAAGCCGCCAGAGGCCTCAGGGCAGAAGGCATCACCATCTATGCCATAGGTGTAGGAGATGCAGATGAGACAGAGCTCTTGGAGATCGCAGGGTCGCCAGAGAAGAATTTTGACTCTTTGAGACTCATTAAGAACGAGGTGGTCCGAGACATTTGCTCCTATGAAGGCTGCACTATTGATGTGGCTATTGGATTTGACATCTCCAGAAGGACCAGGTTTCAAAGACTGTTCCACGATCAACTAAAACTGCAAGTCCACCTTCCCCAAATAATTCACAGATTATCTTACTTGGAAGAACTTTGCTGTGCTTCCTATCCTGATATTGTTATTCAGATAGGCTTCCACATTGCGACCCAAAGTGGAAAGGTTGTTTTTGAATCACAGTTTGAGAAATACAACCCTGACATCATAAAAACACTGATGGCACTGCAGACTACAGAAGCAACATACTTCAACACTGAGTTTTTGcagtcctttaaaaataaatttaagaaAGAGTCAGAAGCCAGAGTCAAGGTGCTGTTAGTGTTCTCTGATGGACTAGACGACGTCTTCGAGAGACTTGAGGCTGAATCAGAAAACCTCAGAAGAGATGgaATTCATGCCTTGCTGACTGTTGCTTTGGAAGGTGTCACAAATGTTAAGGAGCTTCAGAAGTTGGAATTTGGAAGAGGTTTTGGTTATAGTGTGCCCCTTACCATCAGCATGCAGAGCGTTGTCAGTTCAATGTTTAAAGAGCTTGACACCGTTGCGGAGAGAGAGTGCTGTAATTTAATGTGCAAATGTACTGGCCCAGAAGGGCTGCGAGGTCCCAGGGGACCCCCAGGAACGAAG

Function

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002513 True 9879 mRNA 0.47 44 17204463 17248752

Neighbor

gene id symbol gene type direction distance location
AMCG00002506 sh3bp5 coding upstream 67943 17107399 ~ 17136520 (+)
AMCG00002507 NA coding upstream 102344 17095736 ~ 17102119 (+)
AMCG00002501 NA coding upstream 188217 17003048 ~ 17016246 (+)
AMCG00002502 NA coding upstream 211508 16987102 ~ 16992955 (+)
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding upstream 247893 16937361 ~ 16956570 (+)
AMCG00002512 NA coding downstream 21829 17270581 ~ 17272452 (+)
AMCG00002517 NA coding downstream 36319 17285071 ~ 17291512 (+)
AMCG00002511 NA coding downstream 73883 17322635 ~ 17353428 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding downstream 141193 17389945 ~ 17415896 (+)
AMCG00002529 NA coding downstream 197168 17445920 ~ 17471292 (+)
G123653 NA non-coding upstream 56127 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 63028 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 411664 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 549579 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 552499 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 447108 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 677947 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 802260 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1256136 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 1305733 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 218557 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 244381 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2842927 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4074766 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4133631 13044693 ~ 13070832 (+)
G123807 NA other downstream 666684 17915436 ~ 17984730 (+)
G123989 NA other downstream 1583262 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1824941 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1881315 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2993096 20241848 ~ 20333030 (+)

Expression


Co-expression Network