AMCG00002517


Basic Information

Item Value
gene id AMCG00002517
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17285071 ~ 17291512 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002517
atgaaatcttTCCCTTTTCCAGCCTGCAAGAAAAGTGAAGCAGATATTGTGTTCTTAATTGACAGTTCTGGGAGCATTAATCCCACAGACTACACCAGCATGAAACATTTCATGACATCAATTGTAAACAAATTAGACATTGGGGAAGACAAAGTACGTATTGGTGCAATGCAATACAGCAATATAGTGAAACCTGAATTTGAATTGGATAAACATCACCAAGCATCCACTTTACTGCAAGCTCTTGACAATATGCAGCAGCTGGGTGGCGGAACTTCGACTGGAGAAGCCCTTAAATCGGTCTCTAACTATTTCAAAAAAGCACGCCCCAATGTCAACCACTTCCTCATTGTGATAACTGATGGTGAGGCTCAAGATGAAGTTTTACAACCTGCTAAGGCTCTGCGAGAAAAAGGCATAACTATTTTTTCAATTGGTGTTTTTGGTGCCAATTACACCCAGCTGGAGGAAATAAGTGGCTctcaaagaaaaatatttttaattgacaacTACACAGCACTAAACAGTATACAGTACAAGCAGCTGGGTGGTGGATCTTTGACTGGAGAAGCCCTTAAATCGGTCTCTAACTATTTCAAAAAAGCACGACCCAAAGTCAACCGCTTGCTCATTGTGATAACTGATGGTGAGGCTCAAGATGAAGTTTTACAACCTGCTAAGGCTCTGCGAGAAAAAGGCATAACTATTTTTTCAATTGGTGTTTTTGGTGCCAATTACACCCAGCTGGTGGAAATTAGCGGCTCTCGCCAAAACCCTTTTTTTATCAACACATTCGAAGAGCTCAATAGTATACTGGACGAGGTGCTTTTCAGTATACACAATGATTTGAAAGATTaccataaaataaactttgccGATATAATGTTTGTCATAGACACATCTGGAAGTATTTCTTCAGAGGGATTTCAAAGTATGAAGGATTTCATGTATGCCATGGTAAAGAACTCTGACATTGGGAAAGACAGGGTACAGATTGGGGCAACACAATATAGTGTCGTTCCTCGGAGAGcctttgatttaaatgaaaaccatgacAAGAGGTCACTGGAGCAGGCCATCAAAGCAATGCATCTCTTCGGGGGAATCACATACACAGCAAAAGCTCTCAATTTTTCCAAAGACCGTCTGGCAGAATCGTTTGGTGGGCGCAAAGCAAGAGGTGTTCCACAGATTCTAATCACAGTGACTGATGGAGAATCTCATGACAGGGAGCTCTTGAATGTAACGTCCCAGTACATCAGAGACTCTGGTATTATTACTTATGCTATTGGAATAAAGGATGCAAAGAAAGAGGAACTGCTGGCAATTGGGGGGTCTAATGATAAGTACTTCTATGTGGATAACTTTGATAAATTAAAAGAGGTTGAAAAGAGGATTtctgaaattatgttttttaacacaGTATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002517 True 1428 mRNA 0.40 3 17285071 17291512

Neighbor

gene id symbol gene type direction distance location
AMCG00002512 NA coding upstream 12619 17270581 ~ 17272452 (+)
AMCG00002513 NA coding upstream 36319 17204463 ~ 17248752 (+)
AMCG00002506 sh3bp5 coding upstream 148551 17107399 ~ 17136520 (+)
AMCG00002507 NA coding upstream 182952 17095736 ~ 17102119 (+)
AMCG00002501 NA coding upstream 268825 17003048 ~ 17016246 (+)
AMCG00002511 NA coding downstream 31123 17322635 ~ 17353428 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding downstream 98433 17389945 ~ 17415896 (+)
AMCG00002529 NA coding downstream 154408 17445920 ~ 17471292 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding downstream 360963 17652475 ~ 17661173 (+)
AMCG00002525 NA coding downstream 370367 17661879 ~ 17675110 (+)
G123653 NA non-coding upstream 136735 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 143636 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 492272 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 630187 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 633107 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 404348 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 635187 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 759500 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1213376 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 1262973 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 299165 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 324989 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2923535 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4155374 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4214239 13044693 ~ 13070832 (+)
G123807 NA other downstream 623924 17915436 ~ 17984730 (+)
G123989 NA other downstream 1540502 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1782181 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1838555 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2950336 20241848 ~ 20333030 (+)

Expression


Co-expression Network