AMCG00002518


Basic Information

Item Value
gene id AMCG00002518
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17416137 ~ 17423894 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002518
ATGGCCTTCCCTGAAGAATCCAAAGCAGACACTATGGGGGTTCAAGGATTTACAAGTTATGTGGAAGAAAACCAGCAGTTCTTTAATGACctaaaattaagaaataccAAAATTATAATTGACGGAAGCAGTTTGTACTTTCGCCTTTATTTTACTTCAGGCCTTGACCAACAGCATGGAGGAGATTACGATTCATTTGCCGATCTGGTGCAGCAGTTTTTCGAAGCATTGTCGGCATGCAATATAAGTCCCTTCGTGGTTTTAGATGGTGGAATCGATTCCTCAGACAAAAAATTTGCAACCCTAAAGGAGCGAATGCAGAAGAGAATAAGAGATGCAAATGCCCTGTCAAGGGGGTGTAATGGCTCTGTCTTACCCCTTATCACCAAGCAAGTCTTCAAACAGGTGCTGTCCAGACTCAAAGTGCCATACGTCCAGTGCATGTCAGAGGCAGACTTGGAAATAGCTTGTTTAGCCAACCAGTGGGACTGTCCGGTATTGACAATGGACAGTGACTTTTGCATCTTTGACCTGAAGAAGGGCTATTGTCCCCTTGTGGATTTCCAGTGGAACAACGTGAGCAGGTACACAGGCACTGCAGAGAAATACATCCCCGCACGGTGCTTCTCAATTGATAAATTATGCTCCCACTTTGGCAACATGAGCAAAGAGCTCGTTCCTCTGTTTGCAGTAATCATTGGTAATGATTACATCAATCTTCAAGCCATGGAGACCTTCTTTAGCCAAGTGAGATTCCCAGTGGGCAGCCACCCCTTGAGCAGTAGGACACACATCCGCATCGATGGCCTTCTCAACTGGTTGTCGCAATTTGCAGGACCAGAAGAAGCCATTGAAATGGTGGTGAAGTATATTAGTGACAGCCAAAAAGACGAAGTCCAGCAGCTGCTCTCTTCTTCCATGAAGGAATATAAACTCTCTGACAGCAACCTGGCAGATTACTTCACGGATGGAGCACCAGTGTCAAATGTTCCAAAAGTAATTGGGTTTCTGCCTCCCTGGATGCTCACAGCTTTGGGGAAAGGCCAGCTTGCCTCGTTTGTTATCGACGTGCTGGTCTTAGAAAGAGCACTGATGCATATTCAGGTGGAGGACTTCCGACTTCCCAGCAGCAACATGTGCTCTCTGCCAATCCGTCAGGTTATATACGGAttgcttttaaatggaaaaataaacctgTTGCCAAAGGAGATTACCGATGACTGGCACAAAGTTTCTAAACACAGgtgtaacattttcaaagtggAGGAATTTGACAGGTACAATTTAGACTTGAAAAGGACTGTAATTCAAGCCATTCTTCCGAGCTCACCAGAACAGTGTTTACTGCAGAAAATCCCAGAGGTGCCTTTACCAGTGCGTCTCCAGATATTCCTCGAGACGCTGGGAGTGAAACGCTCCATTGTTCACTCTGTTCCTCACCACCtcagtctgcctgtgtgtgtcacttgTTACTGGTTGACTCACTCAAATCCCAAGCCCACCCTGCAGTATCTCCAGGCGCTGGTGTTGGGCATGGTCAAAGCAGTGCGGGAACAACTATGCAGACTGCGGGTGTGGAGGAATGACCGACAGGGCCTCAATGTCGGGGCGGCCCACCTCTACAGCCAGTGGCAGGCCTCTTTACAGATTACCAACATCTTAAACCGACTCCTCTGCTGTCCCCTGCCAGAGCCAGACTGCTCATGGCTTTACAGTGGCACATTTGTGCACAGAGTGGTCCGGGAGCTGAATAGTGGAGTCTATCCTGAATCCCTGCTGTGTGGCTCCATTCTGCCTGGCCAGCTCTACAGGGATCTCATGGGTGCAGCACACTCTGCTGTCGCCCCAGATTTCTTCTCTAGCAAGAAAAAGCAGAGAAATAAGAAGCCAGATAAGCAGCAACAGAGAGAGGCTGAGAAGAGAAGGGTCAGCGAGACACCGAAGGCCCAGCCCTGTCACGACATCAACAACAGGTTTTCAGTCTTGGAACTGGAAGATGAGGACTGAATAGGAAGATCGTTTTATGAGTTTTTGcgctccaaaaaaaaaaatatttcagaatctTGGaatctttaatcttttattagattttttccaGCATGGGTTTTTCCACATGCACTTTTTTCTATAATTGAATGcaagaaagtattttttatatacattttataagggGTACGTGTCTTTTCTAATAATCTGTAATTAAGGAAACAAATTCCTGGTTGTGAACACTTGTCATCTGTTGTCATGTTTTCTTAAAGATAGATAAAACCAGAACAAAAAAGTGTACATTGCATTATAGATACATCTCCACATTTTACAGTTgcgatttaaaaaatgcaacaaaactcaaatcttattattatatactttatttttaggtGCAGGTAAAATTGCTCTTCAATTACCTCTCTCTTATGTGGATcattcatttatctttttaaatacagttaattTATTCTTCAACTTCACCTGTATTGTGCACAACAGGTCACTGTCAAGATGACGAGAGAATTATATGttcaaagtaaaaagtaattatgaaatatgtgcatcaaatcaaaagacaaatGTCAACCAGTAATTTCAATATggtttttaataataactaacTTATGCCTTTGCTTCTTCAGAGAACTGAACtggcatttaaaatgcatgggGGTAAATGATGCCAAGATTAATTCTGCAACATTAATTGTTTGTCAGTTAGAttgataaaaatgttttccccaTTTTAGATCATtcaacttttaattaatttcaaactcTTAAGAATCTCAACTTTAGTTATTTTTGGCATAGTTTACAAACATGAAACCTCAACTGGTACATCTACTGGTAGAAATGTTGAGAATTAAATTTGCAATTCATACAACAATCATACATCTGAAAGAATAAtctaagaatgtattttttttttaaacacttaattGTATGTACGTGACTCAATCATTTCTACTACCAAAATGtcttttatactgtatttatttagaatgtGCAATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002518 True 3006 mRNA 0.41 5 17416137 17423894

Neighbor

gene id symbol gene type direction distance location
AMCG00002515 pik3r4,LOC107556101,LOC107588487 coding downstream 44175 17354650 ~ 17371962 (-)
AMCG00002516 NA coding downstream 107581 17307266 ~ 17308556 (-)
AMCG00002514 NA coding downstream 230229 17183401 ~ 17185908 (-)
AMCG00002510 capn7,LOC107705521,LOC107755679 coding downstream 258114 17137176 ~ 17158023 (-)
AMCG00002509 eaf1 coding downstream 319054 17092906 ~ 17097083 (-)
AMCG00002519 mrpl3,LOC107748644,LOC107688359,LOC107710340 coding upstream 95111 17519005 ~ 17530234 (-)
AMCG00002522 NA coding upstream 120946 17544840 ~ 17553514 (-)
AMCG00002521 cpne4a,LOC108425151,LOC107710314,LOC107602385,LOC107654757 coding upstream 134934 17558828 ~ 17572989 (-)
AMCG00002520 LOC107710314 coding upstream 174755 17598649 ~ 17606949 (-)
AMCG00002523 NA coding upstream 254128 17678022 ~ 17685297 (-)
G123705 NA non-coding downstream 177593 17234370 ~ 17238544 (-)
G123646 NA non-coding downstream 340588 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 366081 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 433491 16980831 ~ 16982646 (-)
G123527 NA non-coding downstream 761274 16653499 ~ 16654863 (-)
G123788 NA non-coding upstream 236173 17660067 ~ 17675110 (-)
G123824 ctnnb1 non-coding upstream 387624 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 627203 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 781774 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 1045340 18469234 ~ 18469607 (-)
AMCG00002503 NA other downstream 441836 16958162 ~ 16974301 (-)
G123585 NA other downstream 576415 16836156 ~ 16839722 (-)
G123263 NA other downstream 2469826 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3761890 13649227 ~ 13654247 (-)
G122862 NA other downstream 4386731 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 266114 17690008 ~ 17706289 (-)
G123829 NA other upstream 498558 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 509570 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 4223161 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4477398 21901292 ~ 21902597 (-)

Expression


Co-expression Network