AMCG00002519 (mrpl3,LOC107748644,LOC107688359,LOC107710340)


Basic Information

Item Value
gene id AMCG00002519
gene name mrpl3,LOC107748644,LOC107688359,LOC107710340
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17519005 ~ 17530234 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002519
AGAATTGGCAAGGGTTTCCAAGGTGTGATGAAGAGATGGGGGTTCAAAGGTCAGCCTGCTTCTCATGGGCAAACCAAAACGCACAGGAGACCAGGAGCATCAGGCCCCGGAGGTgatcCTGGCAAAGTCTTTGCTGGGAAGAAGATGCCTGGGAGAATGGGGAATATTTACAAAACTAACCATGGCTTAAAGGTTTGGAGAGTGAACACCAAATATAACATTATCTATGTTCATGGTTCTGTTCCTGGACATAGGAACTGCATTGTTAAGGTTGGAGATTCAATTCTTCCTTCTCGAGTGGGGATGAACAAAACCCCCCCATTCCCAACCTTTTTCCCCGATGGGGATGAGGAGCTGCCAGAAGATCTGTACGATGCAGAGATGTTTCAGTTCAGTGAACCCTCTGTCACTTAAAGACATTCCTTTCTACTCCTCATGTCTGGAATCTGCCATGAAGTGTGGACCTTGTAATGCCGGTAGCTGTCAGTTTGCTGGTGATCGCACCTTTCATTTCTGATTGCTGCCAATCCAGCCTCGCATTTCAAAAAGAGGCACAATGGAGACCAGGGAGGAGAAAACTTGTGAAATAATAAAGGATTGCAGGAGCAGAATGaatcccacacacacagtactcatgatttccttttcagaaaaaacatgcaaaatatgGAGAAAACTCATACAGTTGCTCTTATAATGACTACTTTCTATTTTCTGTAGAAATGCCCTTTTCTGTAGAAAAATGTTCTATCATAAACAATTTCCTGATTCATAATAGTAATTCATttaatgtggatttttttttttataaatatacatacattggtACTTAAGTCAAGAGTTTATGGGAATAAATCAAATTGAGtgtctgtttttagtttaaaagTGCATGAAACTGGTACACccctttcaaataattaaatgttatttatgcaAGACTTCTAgggtatatatatttgttttgctgataCCTGAATTAAGAAACtgatataaagtatataaaattCTGCCCTTGCCTTCCCACGTCAGTAAAAGTAAATGCAACAGTAGCATTTTGCAGCTGTAATGTCATCCATGATATGATTAAACTTGCATAGGGATGTTGCCCAGTGCCtacagtttaaaacaatgtatacatattagCTGTCCTAGAggtacaaaacataaaaacagccctgatcctCCTTGTGATATGAATCTGTGCTCAAATCACTCAGCTCTGTTTCAGGCTATGCTTTGCCAGTGCCAAGTGAGCCGCATGGTAGATAGATGGCTAGCAAACTGTCAAAGCAGTGGACTGCATCTCTCTCACCCTGGTCTCCACACGTGTCACAATAGAACAAGACATTTAGCACATGACCTTTGGTCCTTTAGCTGCACCTTGGGAGTGATAATGTCCCTAAACTCAGCATGCTCAGTGCGTTCATGCTCAACACATTTGGTGAATACTGAGCTGAAAGTAATCTCATTAGAAGATCCCATACCAGTCTCTGTACTACATCATGACAGTCTTCTCTGGACCACAGGGTCTGTGTGCACGGCTACCTGTTCTGGAATGGAAGGCAGGGGGGTCTATTAACAGTGACTAATGAGCTGTCAGCAGCTTTCTCTTCCCCTAATCTTTTACCTTGTCTTCTAAGGAATTATAAATTACAGAGATTCAAGGAGATGATTACTCTGTGCCTCttttcatttactgtaactttTGAGTTACAAAAGATCTGTCTGTGAGTTTAATCGCAGACCCCCTGGATGCTGtagatggtgatggtgatggtctTTCTATTTTCTAAAGTGCATCTCTTTTTATTCAGCTTGGTGATGTTTATGCatgtatagatgtgtgtgtatattgcatgtttaaaaccaAGGTAATGAggcatattttttatgtttgtggtGCAGAGATTTagtacaaaatatacacttcaaattaaagaaaaaaaaagtctctaaAGCAATATGCCTGAAGTGTATGTCAGGAGATTACAGGCAGCAGCCGTGGTGACTGAAGTACTGAgtattcatttgtaatatttcattattaatggGATTAGGTTTGTTCTCAAGGTGATGTCTTTTCCATGCAGGAAGTAAGGTCTTAATGAATATGAGGGGGCTAGGCAGCGAGAGtatttaaatcacaataataacaGGAAGCCTCATATTGACTCTAACAGTGTGGTTCAGAACCCCTGCCTGGCACGGAGGCTGAGTAAACCCCCAGCGAGACGCACACAGGGCTTGAATGGGTGACGTAGGTTACTGTGACACAAGTTCAGTCCTAGAACTAAAATGTCTGGGGATGGACGGAGTATGAATCAAtcgcttgtttttttgttgttgtatttgtcGTCTGCTAGTTCAGTCAGCATGACAGGGGTGCCGCGCTCTGAGCTGCTAACTGCAGACGTAATGAACGAGCATTTAAGACATCATAAAACTCCTCTCCCAAGGGACTGAAATTCAGTCATAATGAGGTCTGTGCTGCTCGTGGAGGGGGCATCTTTATGTAAATTAAGAGTACAGAGACGAGCACAAATTCAACCTGTTATTACAGAGAATCGCCATAGCCTGGGTAGGCTAATGTAAATGGCCGCCTGAAGCAATTTAAATGGAATACAGAGTTTATGAAGGTAATTCATTTTGTCTTCACCCCGAGTTTTTAGAAGAGAGCCTCTGTGCATCAGTTTGGCgtgtctgtttgacagataacCAGACAGCCAGGCAGGCGAAAAACAGCGATTAGagtgtgatatttaaaaaaaagttaaataccTTGAACATCATTTGATCTCAAACGAATCAATAGTAaatctaaaacttttgacatATCACTTCTGTGCACACACAACCAGATCTATGACACGGGAGCCttgatttttgtgtattttcacaCAGCCGACCACTTGACATTTAAGGAACATGAGGCGGCTATTAAAAGTTATGGCTGCATGGGACGAACTGTCAGCACAGGGGAGGCTGACTCGATGCTACATTCAGGAAACACTTTGATGCGATGCTTGGATCAATAAACTTCCAGCAACTGCTGGAAAACCTGCTTGAAactcctgttttattttttaaattgtcctGGCCAACCAATAACAATGGTGATAAATTGCCAAATTTGGTGAAAAACATATCACATGACAGTATAGGAACACGTCCAAGCAATTGTAAATACTCTGGCACAAGGCACTACCCCTAGGAATGTGCATGGCATTGATGGACAGCTATTTAGACAAAAGGGACTGCTTACATACTGAGCTTGAGATCACCCTTATTTTCAATTTAGCAATACCTTATTGCCAGGaagttgtttagtttttaatttgtttaggttgttctgtaaaaaaaaaaaaaaaaaaaaatgatatagaaCATGACCAAATAAATTGGGTTCCTCATTCTGcagtgattttcattttcatttagttaACTATATACtgggataaaaaaagaaaagaaaatcaaaattgTGAATATGCTGTTTTTTGCCTTTTATTAAAGACCTGGCCACAAAACCACAATTATCATAAAATGCAGTATATATCCcctgtgatttaaaataaaatgagaacctttttttgtataaaataaaggCTCATTCTTGAGGACAGGCAGAATAATCATGCCGGcgaatacaaaatgtatgtgacCTTTATCTCAGTAAACTGAATAAATCATGGCATCAATTTTAAATGAAGGCTGATTGAGTGATTAGCcagtgggaagaaaaaaaatgaattggcaACTTAGAACGCATTAACAGCCCCCTCCAGTTTTAAAAGGTCACACTTCAAGAGCTGGGGTGAGTCCTTTTTCATGAGTGTACACGGGCCAGATACACTGAGAATCAATTTTACATGACAAAGGCAAACGGCAATGGAGGCTCACGGTAAAGTTGCTCAAGCCTTTTTTTCCAAAGCTATTCCCTGTAGTCTGTGGCTCCGGACTGTCGAAGGGACTCATGATGCCATTTTGTATTCGGAGAGCTAAGCTGCATTGTTTCCCAGTGTGTCTCCTCAGCCCAGGTAGTCATTAGGCCGAGAGCGAAATCCAATGACATTTTCAGGGAATGGTGGATAACGATGGCACCGCTGAGTGGTGGGGCTACATACTCAGTGGGTCAACAAAAAAGATAATCTCTTTCAGTGCCTAATTCTGAACAATGTGAAAATATCATCTGTTCATGCTTCAGCAATGTCAATTCCCAGTGTGACCCTCGGGATTGCCCAGCCATGGCACACAGTGGCACATCCAGTCTACACAGTTAACAATACTGTAGTTAAGAGTATATTATTTCAACACCAATGTATGATTTAGTTATGGTACCAACTGAGTTTACAAATTGAATGCCATACAATACAAATCCTAGAGAAAATGAACAGAGTATaccgcccccacccccttcaGCAACACACAGTGGGCCTTGTGTTATATTTACACTTTGGAGATATGAAAGAGAAACCAGTTTCATTCAAAATCTTTCATTTGTGTTCAATCTGAAATGCAATATGCTCTTAATGGAGTGACAGGCTTGTGGATCGAATGTCACAGTCTGATGTTGCTATCTGCTGTCATTAGATCCACGAACGGCAttttagttaataaaaatacattactcGGAGGAATGGAATCTAAATAGGTTACTACAACATCGGCTTGATCTTTTGACCTTGATGTATCTGTATCCGGTTTAACTCGGGCCACTGGTGATTTGGGcgtttttcacatttattgtaaattaatatgaatgtatatattgcatGTGTGTATCTATTTGATCCTAAGTGGCATTCATTGCTGTCCATTACCTGAATGGGTGCAAAAACCTAACCAAGATATGttgtttaaaaactgaattgaattttaatgtttGCCTGTACAATGACTGCTTCTGCCTCCGACAAGCAGTTATGTAGCCGATAGGATCCTATGCAAATGTGATGTGAACTACTATCAGCTGTGGAAGTCAACAAGGTCTGTCATAAGACCAGCCTGAAACTAATGATGTGTCACTGACAATGATACATTGAAGTAAACTTTCATCCAGACAATACCTCtgtctgttaaaatacactttataGTACaggttatgatttaaaatagatttttaaaactgCCTAAaaattgaagttttttttttttttactaagtAAGTAATGCACCATTTTAGAGtaaataattatacatgtatacCTGTAACCTACCAGTcgttacaaaaaaaaacgaCATTTGACTAGTGGAGCCAAAAAtat

Function

symbol description
mrpl3 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 9. Orthologous to human MRPL3 (mitochondrial ribosomal protein L3).

NR:

description
PREDICTED: 39S ribosomal protein L3, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02906 RP-L3, MRPL3, rplC; large subunit ribosomal protein L3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002519 True 5264 mRNA 0.39 4 17519005 17530234

Neighbor

gene id symbol gene type direction distance location
AMCG00002518 NA coding downstream 95111 17416137 ~ 17423894 (-)
AMCG00002515 pik3r4,LOC107556101,LOC107588487 coding downstream 147043 17354650 ~ 17371962 (-)
AMCG00002516 NA coding downstream 210449 17307266 ~ 17308556 (-)
AMCG00002514 NA coding downstream 333097 17183401 ~ 17185908 (-)
AMCG00002510 capn7,LOC107705521,LOC107755679 coding downstream 360982 17137176 ~ 17158023 (-)
AMCG00002522 NA coding upstream 14606 17544840 ~ 17553514 (-)
AMCG00002521 cpne4a,LOC108425151,LOC107710314,LOC107602385,LOC107654757 coding upstream 28594 17558828 ~ 17572989 (-)
AMCG00002520 LOC107710314 coding upstream 68415 17598649 ~ 17606949 (-)
AMCG00002523 NA coding upstream 147788 17678022 ~ 17685297 (-)
AMCG00002530 NA coding upstream 308345 17838579 ~ 17857068 (-)
G123705 NA non-coding downstream 280461 17234370 ~ 17238544 (-)
G123646 NA non-coding downstream 443456 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 468949 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 536359 16980831 ~ 16982646 (-)
G123527 NA non-coding downstream 864142 16653499 ~ 16654863 (-)
G123788 NA non-coding upstream 129833 17660067 ~ 17675110 (-)
G123824 ctnnb1 non-coding upstream 281284 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 520863 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 675434 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 939000 18469234 ~ 18469607 (-)
AMCG00002503 NA other downstream 544704 16958162 ~ 16974301 (-)
G123585 NA other downstream 679283 16836156 ~ 16839722 (-)
G123263 NA other downstream 2572694 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3864758 13649227 ~ 13654247 (-)
G122862 NA other downstream 4489599 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 159774 17690008 ~ 17706289 (-)
G123829 NA other upstream 392218 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 403230 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 4116821 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4371058 21901292 ~ 21902597 (-)

Expression


Co-expression Network