Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00002520 |
| gene name | LOC107710314 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 17598649 ~ 17606949 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: copine-4-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00002520 | True | 417 | mRNA | 0.43 | 4 | 17598649 | 17606949 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00002521 | cpne4a,LOC108425151,LOC107710314,LOC107602385,LOC107654757 | coding | downstream | 25660 | 17558828 ~ 17572989 (-) |
| AMCG00002522 | NA | coding | downstream | 45135 | 17544840 ~ 17553514 (-) |
| AMCG00002519 | mrpl3,LOC107748644,LOC107688359,LOC107710340 | coding | downstream | 68415 | 17519005 ~ 17530234 (-) |
| AMCG00002518 | NA | coding | downstream | 174755 | 17416137 ~ 17423894 (-) |
| AMCG00002515 | pik3r4,LOC107556101,LOC107588487 | coding | downstream | 226687 | 17354650 ~ 17371962 (-) |
| AMCG00002523 | NA | coding | upstream | 71073 | 17678022 ~ 17685297 (-) |
| AMCG00002530 | NA | coding | upstream | 231630 | 17838579 ~ 17857068 (-) |
| AMCG00002531 | NA | coding | upstream | 269056 | 17876005 ~ 17902810 (-) |
| AMCG00002532 | NA | coding | upstream | 451583 | 18058532 ~ 18062065 (-) |
| AMCG00002536 | trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 | coding | upstream | 565182 | 18172131 ~ 18182627 (-) |
| G123705 | NA | non-coding | downstream | 360105 | 17234370 ~ 17238544 (-) |
| G123646 | NA | non-coding | downstream | 523100 | 17075312 ~ 17075549 (-) |
| G123642 | NA | non-coding | downstream | 548593 | 16995129 ~ 17050056 (-) |
| G123637 | NA | non-coding | downstream | 616003 | 16980831 ~ 16982646 (-) |
| G123527 | NA | non-coding | downstream | 943786 | 16653499 ~ 16654863 (-) |
| G123788 | NA | non-coding | upstream | 53118 | 17660067 ~ 17675110 (-) |
| G123824 | ctnnb1 | non-coding | upstream | 204569 | 17811518 ~ 17815466 (-) |
| G123845 | NA | non-coding | upstream | 444148 | 18051097 ~ 18052332 (-) |
| G123876 | NA | non-coding | upstream | 598719 | 18205668 ~ 18206132 (-) |
| G123926 | NA | non-coding | upstream | 862285 | 18469234 ~ 18469607 (-) |
| AMCG00002503 | NA | other | downstream | 624348 | 16958162 ~ 16974301 (-) |
| G123585 | NA | other | downstream | 758927 | 16836156 ~ 16839722 (-) |
| G123263 | NA | other | downstream | 2652338 | 14941260 ~ 14946311 (-) |
| AMCG00002421 | sec61b,LOC102796100 | other | downstream | 3944402 | 13649227 ~ 13654247 (-) |
| G122862 | NA | other | downstream | 4569243 | 13028197 ~ 13029406 (-) |
| AMCG00002524 | NA | other | upstream | 83059 | 17690008 ~ 17706289 (-) |
| G123829 | NA | other | upstream | 315503 | 17922452 ~ 17989465 (-) |
| AMCG00002533 | ulk4,LOC107704090 | other | upstream | 326515 | 17933464 ~ 18041573 (-) |
| AMCG00002584 | NA | other | upstream | 4040106 | 21647055 ~ 21678545 (-) |
| AMCG00002596 | NA | other | upstream | 4294343 | 21901292 ~ 21902597 (-) |
