AMCG00002523


Basic Information

Item Value
gene id AMCG00002523
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17678022 ~ 17685297 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002523
GTGAGTAACACCACGCCCTGTTGTCGTGCTTCGTAGAATAACAGTTGCCGCAGTTTGTTAGAGAACTCAGGGCTATTTTTCTGTCCCGTTAGAAACAGTTTGCAGTCCATTTTAGGCCGTTTTCTGGGAAATACAATGTCTCATACAATAATAACCACGTCGACGACCACCAGCAGCTCGGACAGCGGCTTCGTCAGCGCGGGCTACGCCAGGTCTGTGCAGGGGATGCTGAAGATCGCGCAAGTGGTGGTGTTGCTGATTGCTTTCCTGTGCGTTCACATCTCAAAGCCGACAACTCTCACAGAATACAGCTATTTTGAGGTGGTCACTGTTTGGTTTCTTGTAGTCTTCCTAATTTTCTTCATCATGCACATATTCCGGCTCCAGCCCAAAATGCCTTGTATTAACTGGACTCTTACAGAGTTTGTGCATTACGTCATTGGAACTATTTTAATCCTCATCGCCTCTATTGTAGTCATCGTGAAGAGCTATGGGATATCTGGGCTGGTAGCTGGAGCAGTGCAGCTGTATAAAACAATCTCCAAAGATGGCTTCTCAGCCGATGTGCTGGGCATGTTGCTGTTACATGAATGCAGAGACAGAAGTTGAACCATCTTGTGTGCCTTGAACAAAacagtattatatttaaaacgtGGCTTTTTATATTCAAGTTTGAattgcatatatatgtgtgtatatatgttgttgttgatgttgctAAATATTAGCACCAGAGTTcacattgaaatatttaaaaaaagaacatgtcAATATCTGACAGATTGTATTTACATAGGTCAATTTactgtgatttaattttaattaagagaTAGGGAACATATGTTACAAGATTTATATATGCAAAAAGGCCCTAGAATGTATGAAAACAAGCTTGTTATATACAGGTATAACTAGATACCTGATGATAGAAAAGGTTAGGTTTATCATtgcaagaacaaaacaacaaaatcttgTTATAGGCTTAGTTtgagatacatttttaattaattatttatttaaaaagttgttaCTTGACTGATGTTGAAATCCAAAGACACCCCAGCTGCTGActttatttggtattttttctAACATGTTGATATCTGTCTCCTCAATTCCACTGcctcatgaaaataataaaacaccttGAGGTTTCCTGGGTCCTATTCATTTAAGCCTGCTCAAGCAAGATTGCCCTTCTATTTAACACAGGGGCACAACAGACTTTGTTTCCCTGCTTACAGACTCCAAGACTCTTAAGCCCTCTGATACTGAGCTAACTTGTTTGCAAATAACTTTGCATGCATGCAGTATTTtgacaacaatttaaaaaaaatcaaacccagTTGCCTTGAAATGTGCAAAGTCATAGCAAAGTTATTAGAGGCAGAttgtttgatgggaaattgttgCTGCCAAGTGCTAATGGTAAATTACGTCCTAATTTGATGAGAAACAGAGTAAAATGAAGGC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002523 True 1473 mRNA 0.39 4 17678022 17685297

Neighbor

gene id symbol gene type direction distance location
AMCG00002520 LOC107710314 coding downstream 71073 17598649 ~ 17606949 (-)
AMCG00002521 cpne4a,LOC108425151,LOC107710314,LOC107602385,LOC107654757 coding downstream 105033 17558828 ~ 17572989 (-)
AMCG00002522 NA coding downstream 124508 17544840 ~ 17553514 (-)
AMCG00002519 mrpl3,LOC107748644,LOC107688359,LOC107710340 coding downstream 147788 17519005 ~ 17530234 (-)
AMCG00002518 NA coding downstream 254128 17416137 ~ 17423894 (-)
AMCG00002530 NA coding upstream 153282 17838579 ~ 17857068 (-)
AMCG00002531 NA coding upstream 190708 17876005 ~ 17902810 (-)
AMCG00002532 NA coding upstream 373235 18058532 ~ 18062065 (-)
AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding upstream 486834 18172131 ~ 18182627 (-)
AMCG00002539 trim71 coding upstream 518080 18203377 ~ 18204483 (-)
G123788 NA non-coding downstream 2912 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 439478 17234370 ~ 17238544 (-)
G123646 NA non-coding downstream 602473 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 627966 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 695376 16980831 ~ 16982646 (-)
G123824 ctnnb1 non-coding upstream 126221 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 365800 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 520371 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 783937 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 899412 18584709 ~ 18585930 (-)
AMCG00002503 NA other downstream 703721 16958162 ~ 16974301 (-)
G123585 NA other downstream 838300 16836156 ~ 16839722 (-)
G123263 NA other downstream 2731711 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 4023775 13649227 ~ 13654247 (-)
G122862 NA other downstream 4648616 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 4711 17690008 ~ 17706289 (-)
G123829 NA other upstream 237155 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 248167 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 3961758 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4215995 21901292 ~ 21902597 (-)

Expression


Co-expression Network