AMCG00002524


Basic Information

Item Value
gene id AMCG00002524
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17690008 ~ 17706289 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002524
ATGGTGTTCAGAATTTCAGACCGGCTGCTAACCACAAGCCAACCCCCTCACTCCAGCCCCGAGACGTGTCTGTCTGTTGTCGAATGTTTCACAGGAGAAGACAAGCGGGTTGATGCCGTGAAGATGGAGGAGAGCCCCGGGTCTCAAACAGtcatcaccaccaccagcaGTAGCAGCTCCTACTCGGATCACTTCTCCACCTCCACCCTGGCATACGACAAGCACTTCCTCAGGACTGTGCCTGGCATCCTCATATTGGCAGAAATCGTCCTCGGTCTAATGGTATGGACCCTAATAGCTGGGACAGAATATTTCCGTGTTTCTGCGTTTGGCTTGGTGATGTTCGTGGCGGTGTTTTACTGGGTGCTGACTGTCTTCTTCCTGATCATCTACCTGACGATGGCTTATACCAGGATTACTCATGTGCCATGGGCCACAGTGGGTTTGTGCTTCAATAGCAGTGCTTTCCTCCTGTATTTCGTGGCCGCTGTGGTAGATGCAGTGTCAGTGAGACAGGCAGGCCATCGCAAGCATGACTTTAGCAGTTGGGCTGCATCATCGtTCTTCGCCTTCATGGTATCACTGTGCTACGCAGGAAATGCGTATTTTAGTTATAAGTCTTGGAGATCAAGGGATGAAGGAAACTGACAGTCTGGAATAAGATGAAGGAACCTAAGCATCCAAAGACAGCTGAAGGAGAAATTTGGAGTCAGATATTTTCTTCCACCAAGTTGAAGGAagccatttttaaacaataacttGGATTAAGGTGAAAACTTTTCCTGAAGCTGTCTAGACACTACTAACAAGCCTTTTTCATCAACAGGTCTTTTGAAGACAGGAGTTGAAACagttgcagattttttttttttttatgtttttgtaacatTGACAAGTGTTGAAAGGTAAAACAAAGACTATGAGaccattttttttcataaggaagttttatttttaaacttgaaattgtatttatattgtttttgtttttattttactaagaGTATAATGTTTCCTCCCCTTTCAATTTCTTCCTTCTCTTATAATGTGAGCATGGCCATcctgtaatttaattacaaattacaacgaatatgaaaaacaaaatgctgtatatattttaaatgttctgaagtatttctgtttttatgttttgttctgttttttacaaCAGAAACATAAATGTTCAGGGAAATTCTCAGTTGacgaaaaaaataatacaacattagCCTTAATCACCTACATTTGTAAATGGATTtcttgaaatacatatttatttattttgattgttcaATGAAGTGATAAATACAAGTACATTTGATAAATCACTGAAGGATATTATACAAAGTTTTATCCTAAAATAGGGATTATATTATTAGTGGAAAAACTGAATAATCTATTGAAGTGGCTGCTCCCTTCTGAAAAATAGAATTACATGAAGAAGGTTTTACTTTTCAAATAGTTTTCTAAGAGCCTTTTTATGTAATATTGATATGTATGGTTATATATCTACACAGTATTATGTAGCAGGGATGTACCATCAGGAAAATGTGAGTTTTATTAACTCACTAGTGttgctctaaaaaaaaaaaaaaaaaagtaaacacaagGTGGTGCAGTTTTCCTCAAGTCTTTCAAGAAATTGAGCAaggattttgtttaaatatttacttgTACATTAGTTTCTCAAATGAAAATATAGACTGacattgttaaagaaatgtagCTTTAGCACCCAACATTATAATAACAGTTTTTCACCTGTTATGTTCCTTAATTAATACCATCTTTGGTTTCATTTAGAAAAGCAATATAATGCCTACGACACATTAAGTGCAACAGAggatatatgtttttgttcttacTGCAAACATTTAATGTCAGAATAAACCTCCATGTTTGCTGCCACA
>TU155213
AGTAATAAGCCAGCAAATGTCTGaattgttataaaataaacacacgaCGTCGCTTCTTTTCGGGAGTGCGAACGCCTCTGACGTCACCCGTTGGCGGCAGTCTCCTGTTACCTGGGGGGCGTGGCTTCGGACTCCATCCACATAAAGAAACACATGAAGGGGGTTTGAGCTTTTCTCTCCGCCTGAGGTCTGCGCTGCGAGATTTGTGCGTAGAGACTGCAAACCTATTGAAACCCCGAAACTGGACCAACTATGTGTAGGCACAGAGTCTCCTCTTTATCCGATCGTGATTGTGTGAATACCTGAGCCATGTGCGGTTGCAGAGCTCTTGAGGGGAATCTAATGAGTGAAGGCGAGCAGATCCCATTTTGGCTGAGCTGAAAAGTTCTTGTCACCCGGCTCTCtggttattgattgatttgctCCAGGTATAAGGTTGTTTTCGGCTGGGGTGCCCGCCTGGGTTGCGATTTCCCTCAGCAGGAGAAGACAAGCGGGTTGATGCCGTGAAGATGGAGGAGAGCCCCGGGTCTCAAACAGtcatcaccaccaccagcaGTAGCAGCTCCTACTCGGATCACTTCTCCACCTCCACCCTGGCATACGACAAGCACTTCCTCAGGACTGTGCCTGGCATCCTCATATTGGCAGAAATCGTCCTCGGTCTAATGGTCTTTTGAAGACAGGAGTTGAAACagttgcagattttttttttttttatgtttttgtaacatTGACAAGTGTTGAAAGGTAAAACAAAGACTATGAGaccattttttttcataaggaagttttatttttaaacttgaaattgtatttatattgtttttgtttttattttactaagaGTATAATGTTTCCTCCCCTTTCAATTTCTTCCTTCTCTTATAATGTGAGCATGGCCATcctgtaatttaattacaaattacaacgaatatgaaaaacaaaatgctgtatatattttaaatgttctgaagtatttctgtttttatgttttgttctgttttttacaaCAGAAACATAAATGTTCAGGGAAATTCTCAGTTGacgaaaaaaataatacaacattagCCTTAATCACCTACATTTGTAAATGGATTtcttgaaatacatatttatttattttgattgttcaATGAAGTGATAAATACAAGTACATTTGATAAATCACTGAAGGATATTATACAAAGTTTTATCCTAAAATAGGGATTATATTATTAGTGGAAAAACTGAATAATCTATTGAAGTGGCTGCTCCCTTCTGAAAAATAGAATTACATGAAGAAGGTTTTACTTTTCAAATAGTTTTCTAAGAGCCTTTTTATGTAATATTGATATGTATGGTTATATATCTACACAGTATTATGTAGCAGGGATGTACCATCAGGAAAATGTGAGTTTTATTAACTCACTAGTGttgctctaaaaaaaaaaaaaaaaaagtaaacacaagGTGGTGCAGTTTTCCTCAAGTCTTTCAAGAAATTGAGCAaggattttgtttaaatatttacttgTACATTAGTTTCTCAAATGAAAATATAGACTGacattgttaaagaaatgtagCTTTAGCACCCAACATTATAATAACAGTTTTTCACCTGTTATGTTCCTTAATTAATACCATCTTTGGTTTCATTTAGAAAAGCAATATAATGCCTACGACACATTAAGTGCAACAGAggatatatgtttttgttcttacTGCAAACATTTAATG

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002524 True 1907 mRNA 0.37 6 17690008 17706289
TU155213 False 1722 lncRNA 0.37 3 17690038 17696504

Neighbor

gene id symbol gene type direction distance location
AMCG00002523 NA coding downstream 4711 17678022 ~ 17685297 (-)
AMCG00002520 LOC107710314 coding downstream 83059 17598649 ~ 17606949 (-)
AMCG00002521 cpne4a,LOC108425151,LOC107710314,LOC107602385,LOC107654757 coding downstream 117019 17558828 ~ 17572989 (-)
AMCG00002522 NA coding downstream 136494 17544840 ~ 17553514 (-)
AMCG00002519 mrpl3,LOC107748644,LOC107688359,LOC107710340 coding downstream 159774 17519005 ~ 17530234 (-)
AMCG00002530 NA coding upstream 132290 17838579 ~ 17857068 (-)
AMCG00002531 NA coding upstream 169716 17876005 ~ 17902810 (-)
AMCG00002532 NA coding upstream 352243 18058532 ~ 18062065 (-)
AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding upstream 465842 18172131 ~ 18182627 (-)
AMCG00002539 trim71 coding upstream 497088 18203377 ~ 18204483 (-)
G123788 NA non-coding downstream 14898 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 451464 17234370 ~ 17238544 (-)
G123646 NA non-coding downstream 614459 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 639952 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 707362 16980831 ~ 16982646 (-)
G123824 ctnnb1 non-coding upstream 105229 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 344808 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 499379 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 762945 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 878420 18584709 ~ 18585930 (-)
AMCG00002503 NA other downstream 715707 16958162 ~ 16974301 (-)
G123585 NA other downstream 850286 16836156 ~ 16839722 (-)
G123263 NA other downstream 2743697 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 4035761 13649227 ~ 13654247 (-)
G122862 NA other downstream 4660602 13028197 ~ 13029406 (-)
G123829 NA other upstream 216163 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 227175 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 3940766 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4195003 21901292 ~ 21902597 (-)
G124719 NA other upstream 5379705 23085994 ~ 23296115 (-)

Expression


Co-expression Network