AMCG00002525


Basic Information

Item Value
gene id AMCG00002525
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17661879 ~ 17675110 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002525
TTTATTTCATGTTACACGTAACGTGTTACACTGTGACACagtttgcctttttgtttcttatcaAACACGATGTCTGAACGATTCGTCtgttgttctttcatttgacaCTTTCGCTTTCCCTTTTCGACACACTGTAACTTTGATTGTCTCCAGCTTATTTAGCTAGGTGTGTGTGGCGCATAGACTACATAAACCTCCAGGAACACAGACGGGGCAGACTACACTTCATTCTGCACActtaatcaatgtattttacactTTATTAGGATGGCTGCCGCTCCAGAGAGCCCCGTTTACAATACTACTACtgaacaacaagaaaataaaaaaccgGCAGTTTGTATTGTTCCATCGAAACATTTGGACAAACTCCGATTTTTCATTAAACTGGCCGAATTGATTCTCTCCTTTATTGCCTTTATCCTGGAAGAGATTGTCAGCAATTGCAACAGCTGTGGACCGCTCTACTTTTTTGAGTTTGTAAGCTGCACTGCCATGTTATTCACCTTTCTGCTACTGGTCCTGCTCGCAACGCCCTTGAATAAAAAGGTTGGGATTGAAAAGTGGGACTACGTGGACTTTATATACACGGCTGTCATCGGCGCTCTGTTCCTCCTCGCTTCAATTGTGTTTGCAGCTGATAATGGGAACACAACACTGGAGACAGCAGCTGTGgTCTTTGGGTTCCTGGCGAGTATAGCTTTCATCATTGATATTGCAGTGTTTTACAAGACCAAAGGCTTTCCTTGGAAGGATAATTCGGAAAGAACAAATGGGACACAGAGTGTACCGGCTGAGGCTGAGAAACTGAATGGATCGTCAGACACTGCGTCATGAGGACTGTGTTCACACATTCGCTGGGCCGTTTCCCAGAATGTTTGGCTTTttaacttcaaaatgtattgcagaGTTCATCACATTCACaagtgaaagcaaaacaaagaaattgaTATATAGCATCCTCCTCTCCAATTCTTGTCCACTGGCGTTTTAATTTGTTAGCTGTATGACTTATGGCAGGAAATCCTGAAGTGAACATTGAGAATTCTCCCTAACTGGTTACTTTGGATTACTGGTTATCGATTACTGATAACATGAACTAATACGAGGTATCCCCATCGTGATATTAGGGATTTCCActgtgtttttaacatttgcatCTAGTTAATTaacaagacaataaaaaaagatcCTACAAAGGCCTTTACAAAGGTATCTATTTTAACGTAGCTGTTGTTTTAAGGTGGCCTGTTTGAAAGGGGGTTCTAGATGTGCATTCAGCTGGAGGTGTGGGTAACATTAAGAAGTAAGCTCATAATACCCAaatcattgtaaaatataaaaaaataaggagGGCGGGCCAATATTTAAGGACACTATTTTGATTTAGAAAATGACAGTAAAAATTTAATCTTAAACTTGTTTTCAAAGGATAAAGCCAGATCAAGTGTAAATTCTGAAATGAGCTGTTTTATGTGTGTTAATCATAGGATAAAAATCAGGATTTTATCTTGGgcttcaaatttaaaatgagtATTTGCTTTCCCTTGAATTAATTTCTAGTAGGTTTAAAGATGTTATTCCTTTGTTGttctttaattgtaatttaatttaattgtatttccccTGTTTCTCTGCATATGAATAGCAGCATTGAGATCTTTTGCATGACTTGCTAAGCCTTCCTTTTCCATCGTAAATTTCTTGTCAACATCACAACCTCTAACTATGGATTGTACTCTGCTTGCTATGCaaagctttttatattttttatatcaatataGCTGACCGACGTGGGTGATGGTTGTTTCTCCCAACAGTGATGAAGAGATTTTACTGACCacattttcttagtttttctttagttttgaaAAGCCTTGTTGCCTTCACATCTGCAAGTAAAAAAAGACTTGGAAATATTCATCCCTAAGTAGGTTATAACATGCATATCAACACCAATGTATCAAGACAAATGTCATTCTTAATCAGATTGAACTCTTTTAGTCTTCCCATTACAATATGAAAGCTAATTCGcttggtatttatttatatatgtgattatgtattatgcatttgcatttgtcctttaattttccattaatttgttcttttaatCAACCAATACTactatgtataattatttaatagcATTTTGTCTGGtgttttaagattattatttgatacatttcaaGTCTATACTTCCTGCTGCAATTTCTCCATTGAGAAATCTTCCTAAAGCCAAAGGACTTTAGGATGagcttttaaatcaataaagtaAATTCCCTATAGCTCCTGATCTTTTTACGATGGGATGGAGGGGTCAAATTATTGTCagtggtttaattattttaaacttaagATTTGTGTGGAGATACAAAATCAATTCTTATCTGATTAATATGCAGTACTTCTGTTTGGAAAcaatgtctatttttttttttttctgtatataattttctatttttttcatgtgCCAGGGATGTGATTTTGGTGTTTAGGTTCCTGTACATTTGATATATCCAATGTTTTGTAATCCATTAGCCCTTGGGGAACTGAGTATAAGGGGTTTGTAGGGCATTTCCTTTGTTAGACAAGCCATCGTGGAATGATTGTCAAgtgtagattttaaaataatttactgtatCTGTCATTTCTAGCAGCAATAGTACATGAGACACTCTGACAGCATTAGGATGATGTTTCCTGAAAGGCTCTTGAACACCAGCTGAAGCCAAAGTTAACAATATGATATCCATCATGGCTGCCCTTTTCTCCACCAGTTGATGGAGATGATTTCTATATGAGACAGGCGTCCTTTTGTTCGTTTGTGATCATTCTGTGTGTATTTCCAGGACATCCATCTTTTTATAGGTGCAATTCTTATATATAAGGAGAGAACCAGTGGACTCCACACACAAGGCAGCCTGGGACGAATGTGGCAATCTGATACACTGGGGAAAGGAGAGGACATTGCTAAGGACTTATCCCTTACCCCCTCATCCAGTTTGCCCAGTGGAAGGAGAATCTGtaaaggggtgtgtgtgtggaggctACTGGGATCAGCAGGTGCGATGTGGTGCTGTAGGAAGACAAGCTTAGGCCAAGGGGCGAGGAAGCCGTGCACAATTGTTATAAGCAATCAATCTTTGTATAGTCTTATTGTAAAGAGTAACTTTGCACCATACTCCAATAAGTCCAATGTAACCCCTATTTTGTAACTTCATTGCAGCAGAGCTGTTGGGCTACATTTGATACCAGATATGCCTTTGAAATTAGTTTTCACTGTaggatatttttaaaaccaatgtAGCTGTCAGCAGCAAGTGCCTTCATGTTTTTTACAGggtttcattttgaatattcagtgaaactgtttttaataatatgtgAAGTACTGATTTGTATGTGTAGTGCAGTAACGTTTTCATTCTTTCCACATTTAACAATAAACTTAATCACTGATGACATgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002525 True 3471 mRNA 0.37 4 17661879 17675110

Neighbor

gene id symbol gene type direction distance location
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding upstream 706 17652475 ~ 17661173 (+)
AMCG00002529 NA coding upstream 190587 17445920 ~ 17471292 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding upstream 245983 17389945 ~ 17415896 (+)
AMCG00002511 NA coding upstream 308451 17322635 ~ 17353428 (+)
AMCG00002517 NA coding upstream 370367 17285071 ~ 17291512 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding downstream 131625 17806735 ~ 17811727 (+)
AMCG00002535 LOC107751889,LOC107704104 coding downstream 322936 17998046 ~ 18050916 (+)
AMCG00002534 cnot10 coding downstream 470102 18145212 ~ 18161564 (+)
AMCG00002540 LOC106606077 coding downstream 662646 18337756 ~ 18346198 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding downstream 781941 18457051 ~ 18458790 (+)
G123653 NA non-coding upstream 513543 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 520444 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 869080 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 1006995 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 1009915 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 20750 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 251589 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 375902 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 829778 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 879375 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 675973 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 701797 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3300343 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4532182 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4591047 13044693 ~ 13070832 (+)
G123807 NA other downstream 240326 17915436 ~ 17984730 (+)
G123989 NA other downstream 1156904 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1398583 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1454957 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2566738 20241848 ~ 20333030 (+)

Expression


Co-expression Network