AMCG00002526 (dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339)


Basic Information

Item Value
gene id AMCG00002526
gene name dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17652475 ~ 17661173 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002526
GTAAAGATGGCCGCTGCGGGGaggtctgtctctgtgtccagtAACTCCAATGCAAATACCAGCACCTTGGAAATGCACAACGGCGATGATGATGACGGACAGAACCTGTGGTCCTCTATTTTGAGTGAGGTTTCCACGCACTCTCGGTCAAAATTGCCATCAGGGAAAAATGTCCTGGTTATGGGTGAAGATGGGGCTGGTAAAACCACTTTGGTAGCCAAGCTCCAGAATATAGAAGAATATATGAAAGGGAGAGGACTGGAATACTTATACTTCAATGTGCACGATGATGACATTGATGTGGTGAGACATTTCCAGGAGTATACAGAGCCAGGAACTGAGATCACCGCATCTCCACAGAGAAGAAACCCATCTGTGGCTGACGGTGATGAGGAGAGCATCGTTTTGCCTCTGGGCGAGAATACACTTACACACAACCTCGGTGTTCCTGTTGTAGTAGTTTGCACAAAGTGCGATGCCATCAGTACCTTGGAAAAAGAACACGACTACAGAGATGAGCACCTCGACTTCATTCAGTTACATATCCGACGGTTTTGCTTACAGTATGGTGCAACACTTCTATACACttcaatgaaagaaaataaaaatcttgatttattatataaatacctTGTCCATAGATTATATGGATTCCCTTTCAACTTACCAGCTCAAGTTGTGGAAAAAGATGCAGTATTTATTCCAGCAGGATGGGACAATGAAAAAAAGATTGCAATCCTACACGAAAATTTTCAGTCTGTAAAAGCAGAGGACAACTTTGAAGATGTTATAGTTAAGCCACCTGTAAGAAAGttCGTACACGAAAAAGAAATTGTAGCAGAAGATGATCAAGTGTTTCTCGTAAAGCTGCAGtctCTACTATCAAAACAGCCTCCAGTTGCTGCTGGAAGACCAGTGGATGCTTCCAACAGAGGTCCTGGGGGTTCCCCTAGAACACCCAACCGCTCCGGATCAACAAACGTGGCCAACGTAATGCCAATTCCAGCAGGTACCAAGAAAATAGATCCCAATATGAAAGgaatTGTAGCTGGAACTACAAGTGAGGGTGTCTTAGCAAACTTCTTCAACAGCCTGCTGAGCAAGAAGACTGGCTCCCCGGGTACTGGGGGCAACAGTGCAGCAGGGAGTGGGGGTAGTATGCCTGGATCTGCAAAGAAATCAGGGCAAAAGCATGGCTTAACAGATGTGCAGGCAGAACTGGATCGGATTTCAAGTAGATCAGAAATGGAAGCATCATCCCCAACTACCCCGACATCTCCAGTAGACGGTGAAGAATCCTGAAGACGATATCAGAAGCCCTTTCATCATCCCACCCCAGTCTGCCtctcccctttttttttttttttggtgtgaatcacagagcaaaacaaaaacaaaaaaacaaagacttcATGTTTACAGGACTGGTGGACCTTTCCGTACTTGGTTCTTTACTGTTTGGTCCGTAAGGGAATTCTGAAAAGGTCACAGAATGGCTACACAGAAGGAACGGGGTATGGACGTCTCGCTAAACATGAGCACTGGTGGGACGGCTCCTACATCTGGTTTACATTGTTTACTTTGGTTGTTAGAATAAAGCTGATGGTTAGCTAATTTTGTCTTCTTTTGCTGCCTGTTTGGAAATGTCCAAATTAGGATCAGATCTACTTTTATCCCTTGAAAGACCAGTGTAAAGTTTTAGCTCAGGATGGATGGACTTGGAAATGCATGTCCAGGTGACCATAAAGCAGCAACTGGAATAAATTAACCAGGAAAGAAAAGGGAACATCAAACCTCAAGGCATACttttaaagattacatttaaaatctgaaataagcataatgcaatttacaaaccTGGTCTTTAAGGGGTCATTGTAGGACAAGAATTACAATGTTGTGTCCAGACACTGGAAAAGCTATAATGCACCTGAAAAGGCTTAAAATGCCCCTTTGTTGTGCGTAACATGCGCATCTGAGGTTGTTTATCTAATAACATGCAATATAATTGAAGGATGCACTACATACGTGGATTTTATTTTGGCCAGTTTATCTTGGAAACTAATCTTTTAGATTAATGGCACTGAAGTGGCAAATAGGTTGCATTGTTTGTACAACTAGAGATCCTATAGTTGCTGCGTAAGGACAGAAGGAAAAGGCAGTGGTGTGTCTCACTTGAAGAATGTACAGTTCTCAAGCTGGAAGATGGTTGGTCCTGTAATTTCAGATATTGTAGTGATGTTTCTATTGATCAGGTCTGTAATCActtaataaaactatttattctGAG

Function

symbol description
dync1li1 Predicted to enable dynein heavy chain binding activity. Acts upstream of or within regulation of mitotic cell cycle, embryonic and regulation of mitotic spindle organization. Predicted to be located in cytoplasm and microtubule. Predicted to be part of cytoplasmic dynein complex. Predicted to colocalize with centrosome. Is expressed in liver. Orthologous to human DYNC1LI1 (dynein cytoplasmic 1 light intermediate chain 1).

NR:

description
PREDICTED: cytoplasmic dynein 1 light intermediate chain 1 isoform X3

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function

KEGG:

id description
K10416 DYNC1LI, DNCLI; dynein light intermediate chain 1, cytosolic

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002526 True 2290 mRNA 0.42 12 17652475 17661173

Neighbor

gene id symbol gene type direction distance location
AMCG00002529 NA coding upstream 181183 17445920 ~ 17471292 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding upstream 236579 17389945 ~ 17415896 (+)
AMCG00002511 NA coding upstream 299047 17322635 ~ 17353428 (+)
AMCG00002517 NA coding upstream 360963 17285071 ~ 17291512 (+)
AMCG00002512 NA coding upstream 380023 17270581 ~ 17272452 (+)
AMCG00002525 NA coding downstream 706 17661879 ~ 17675110 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding downstream 145562 17806735 ~ 17811727 (+)
AMCG00002535 LOC107751889,LOC107704104 coding downstream 336873 17998046 ~ 18050916 (+)
AMCG00002534 cnot10 coding downstream 484039 18145212 ~ 18161564 (+)
AMCG00002540 LOC106606077 coding downstream 676583 18337756 ~ 18346198 (+)
G123653 NA non-coding upstream 504139 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 511040 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 859676 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 997591 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 1000511 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 34687 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 265526 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 389839 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 843715 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 893312 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 666569 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 692393 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3290939 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4522778 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4581643 13044693 ~ 13070832 (+)
G123807 NA other downstream 254263 17915436 ~ 17984730 (+)
G123989 NA other downstream 1170841 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1412520 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1468894 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2580675 20241848 ~ 20333030 (+)

Expression


Co-expression Network