AMCG00002529


Basic Information

Item Value
gene id AMCG00002529
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17445920 ~ 17471292 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002529
AAGGTGTTGAAGGAGATTCCAGTTGGAGGCCTCAACCCCAACGAGACAGTGCAAGCCAATGTGGAGGCCCAGCTGTTATCTCAGCTCCATCACCCCACCATCCTCAAATTCTATACCAGCTTCCTCGAGAGAGACAATTTCTGCATAATAACAGAATACTGTGAGGATGGTGATCTGGACTATAAAATTGAAGAATACAAAGAAGCTGgcaaaacatttgaagaaaGACAGATAACAGAGTGGGTCATCCAGCTGTTGTTAGGTGTGCACTACATGCATGAAAggagAATACTGCACAGggatttaaagacaaaaaacattttccttaaaaataacatcGTTAAAATAGGTGACTTTGGAGTTTCTTGTCTTCTCATGGGCTCCTGTGATCTGGCCACTACATTTACTGGAACCCCGTACTACATGAGCCCTGAGGTGCTCAGTCACCAAGGCTATGACTCCAAATCTGATATATGgtcTCTGGGATGTATCTTATATGAGATGTGCTGTTTGGACCATGCATTCAATGGCAATAATTTCTTATCTGTTGTCATGAAAATCGTGGAGGGGAAAACTCCTGTGCTGCCGGACAGATACTCAAAAGAACTCAATTCAGTCATGGAAAGCATGCTAAACAAGAATCCTTCGTTAAGACTGTCAgctgcagatatcttgaaaatgaaattcaTCGAAGAGCATCTTCAGaatataaaacacaaattctcAAGCATGACACTGAAAGACAAAACCTTGAACTGCAAGAATGAAGTTGCTCAGATTCAGAATGCTTTGCAGAGAAAAGTTCACCTACAAACTCTCCGGGAGCGGTCGGAAGTTCAGAAAATGACACCCCGGGAACGCATGAGGCTGCGGAAATTACAAGTCGCAGATGAGAAAGCCagaaaattaaaGCAACTCGCAGAAGAGAAATATCAGGAAAACTGTCGTCGGATGCAAGAACTGAGGTCTCGTAACTTTCAGCACGTCAACGTGGATGTGCTAAACGACTATACGGAGCAGACTGTGAAACAAGCCCACCAGACTCAGCCCATTACTGCCCAGGATTACAGATCGCTGAGCCACTCAGATcccacagagagacaggagactGGCAGAATATTCCTGAAGATCCCCAAACTGCAGAGGCGTACTATTATGAAGATAGGTTTGAGTCATGCTCtgatgaagaggaggatgagTTTGAAGCCTCAGACACCTTGTACAGAACTTGTGGGC

Function

GO: NA

KEGG:

id description
K20880 NEK11; NIMA (never in mitosis gene a)-related kinase 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002529 True 1236 mRNA 0.44 11 17445920 17471292

Neighbor

gene id symbol gene type direction distance location
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding upstream 30024 17389945 ~ 17415896 (+)
AMCG00002511 NA coding upstream 92492 17322635 ~ 17353428 (+)
AMCG00002517 NA coding upstream 154408 17285071 ~ 17291512 (+)
AMCG00002512 NA coding upstream 173468 17270581 ~ 17272452 (+)
AMCG00002513 NA coding upstream 197168 17204463 ~ 17248752 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding downstream 181183 17652475 ~ 17661173 (+)
AMCG00002525 NA coding downstream 190587 17661879 ~ 17675110 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding downstream 335443 17806735 ~ 17811727 (+)
AMCG00002535 LOC107751889,LOC107704104 coding downstream 526754 17998046 ~ 18050916 (+)
AMCG00002534 cnot10 coding downstream 673920 18145212 ~ 18161564 (+)
G123653 NA non-coding upstream 297584 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 304485 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 653121 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 791036 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 793956 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 224568 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 455407 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 579720 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1033596 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 1083193 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 460014 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 485838 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3084384 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4316223 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4375088 13044693 ~ 13070832 (+)
G123807 NA other downstream 444144 17915436 ~ 17984730 (+)
G123989 NA other downstream 1360722 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1602401 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1658775 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2770556 20241848 ~ 20333030 (+)

Expression


Co-expression Network