AMCG00002530


Basic Information

Item Value
gene id AMCG00002530
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17838579 ~ 17857068 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002530
CAACATCAGGACAATATGCTTGGTGGTACAATGCAGAATTCAATGGCACTTCTGAATAACCTGGTTGAGGATAAAGAGACTAATCTTCAGCTGCTGTATGAGGAAGGTTTGGTAGACGTTATCTGCAATGTTTTCACTAAGACCGCAATCCTGTTCCTTGAGAAGGAAGATAAGCAAAGCATGAAGAATGGACACAATCTCCTGCTCTCATTACTGGATGTTTTACACAGTATGCTGAGACATACTTCCAACGTAGTACGAGTGGCATTGCAGGCTCAGAAATCGGACACAGGAGGGGACAACCAGGCCGCAGAGGACCTTCTGCTCACCAATAAACCTCTGACGGACTTAATTAGTCTGCTTATTCAGCTGCTGCCAAGCAATGACCTTGAGGTATATGAGGGTGTGATACCATGCCTCTCTTTATTAGTTCAGCTGTACGGAGGGGACAACCCTGACAGCATGTCCCCAGAAAGCATTCACAGCTTCACAGAGGCACTGAACTCACAGCAGGACCCGAAACAACAGAAGCTGCTGCTCAGGGTTATTAGGCGTTTGCACTGCTTGGTGATTTGTCTCCCCGATTTCACAGGAAAAtccaataacaacaacaacaacaacaacaacaataataatccagCTGTCTTCTCTAATGACTGTCAGTACTGTGTGCATTAA

Function

GO: NA

KEGG:

id description
ko00640 Propanoate metabolism
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002530 True 678 mRNA 0.45 5 17838579 17857068

Neighbor

gene id symbol gene type direction distance location
AMCG00002523 NA coding downstream 153282 17678022 ~ 17685297 (-)
AMCG00002520 LOC107710314 coding downstream 231630 17598649 ~ 17606949 (-)
AMCG00002521 cpne4a,LOC108425151,LOC107710314,LOC107602385,LOC107654757 coding downstream 265590 17558828 ~ 17572989 (-)
AMCG00002522 NA coding downstream 285065 17544840 ~ 17553514 (-)
AMCG00002519 mrpl3,LOC107748644,LOC107688359,LOC107710340 coding downstream 308345 17519005 ~ 17530234 (-)
AMCG00002531 NA coding upstream 18937 17876005 ~ 17902810 (-)
AMCG00002532 NA coding upstream 201464 18058532 ~ 18062065 (-)
AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding upstream 315063 18172131 ~ 18182627 (-)
AMCG00002539 trim71 coding upstream 346309 18203377 ~ 18204483 (-)
AMCG00002537 NA coding upstream 358727 18215795 ~ 18224850 (-)
G123824 ctnnb1 non-coding downstream 23113 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 163469 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 600035 17234370 ~ 17238544 (-)
G123646 NA non-coding downstream 763030 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 788523 16995129 ~ 17050056 (-)
G123845 NA non-coding upstream 194029 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 348600 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 612166 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 727641 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 925077 18782145 ~ 18782366 (-)
AMCG00002524 NA other downstream 132290 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 864278 16958162 ~ 16974301 (-)
G123585 NA other downstream 998857 16836156 ~ 16839722 (-)
G123263 NA other downstream 2892268 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 4184332 13649227 ~ 13654247 (-)
G123829 NA other upstream 65384 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 76396 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 3789987 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4044224 21901292 ~ 21902597 (-)
G124719 NA other upstream 5228926 23085994 ~ 23296115 (-)

Expression


Co-expression Network