AMCG00002540 (LOC106606077)


Basic Information

Item Value
gene id AMCG00002540
gene name LOC106606077
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18337756 ~ 18346198 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002540
ATGAAAAGGGGCCTGTCAAATCTTGACAATGGCGGACTCTCGTTCACTCCATTGGTGGTCATTGAACTGGCCAAGGACACCAAAGAAGAAGCTGTATCGTGGTTATTAAAGAGGGTGAAAGACAAGCAGCGGGATGGAGGGGCTGATCTGTTTGTGGAGCAACTGCCAAAGGACGTCTGGGACAGTGCTAATGAAAACCCTAATGTGTTTATCGTGAGCGCCTCCAGAGAACGACTGCTATTCGGGGCTGAGGACGTCGGCCTGGTAAAGGAATGTGATGGTGATGAGTTTCTCAGCATGGCAGAGTGTCAGTACATTATTAAGTACGGGTTGGATACCCTGAGGGCCAGGGAGGAGACTAGCATCCCGGGTTATCCGCAAGTTAAGCTGTACCCAGGAAAATCCATCTACAAAATCCGCCTCTACTTCGGCGAAGCCATTGCCATATACTTTGGTTTCCTGGAGTACTTCACCTTTGCCTTGTTGCCTATGGCCTTGATTGGAATCCCATACTACCTGTTTGCCTGGGAGGATTACGACAAATACGTGCTCTTTGCCTCGTTCAACCTGGTGTGGTCCACTGTCATTCTGGAGGTGTGGAAGAGATCCTGTGCCTGGCTGGCCTACAATTGGGGCACCCTCATCAGAAAGAAGGACTTTGAGGAGCCAAGACCTGGTTTCCATGGCGTTTTGGGCCTGAACCCCGTTACAGGGCGTGAGGAGCCCACCTACTCCAGCATGAAGAGGCAGCTGCGCATCTACTTGGTGTCAGTCCCCTTCGTCTTGTTGTGCCTTTACTTCTCCCTGTACGTCATGATGATCTACTTCTCCTTGGAGAACTGGGCTCTGAACCTGCACGAGGAAGAGCAGTCCTTTTGGACTAGCCTGTTGCTGTTTGTGCCCAGTATCATCTATGCCATCGTCATCGAAATCATGAACAGGCTGTACCGCTACGCTGCTGAGTTCTTAACCGGCTGGGaAAACCACAGACTGGAATCAGCATACCAAAATCATTTGATCCTGAAGGTTCTGGTGtTCAACTTTCTCAATTGCTTTGCATCTCTGTTCTACATTGCGTTTGTGCTTCATGACATGAAACTTCTAAGACAGAGTCTTGCTACGCTGCTCATAACATCACAAATCCTCAACCAAATTATGGAATCCATCCTTCCGTTCTGGTTGCAAAAGAGACGCAACAAAATGGTGCAGAAGAAAATTGGAAACATCACGGTGGACAAGGAACTGCCCTGGACCGAGCAAGTGAAGCTGGAAGTGGATATGAGCACTTACTTAGGCACGTTTGATGACTACTTGGAGCTTTTCCTGCAGTTTGGCTATGTCAGCCTTTTCTCCTGTGTCTACCCTCTAGCAGCTGTGCTGGCGGTTTTGAATAATGTCACGGAAATCTATTCAGATGCCTTAAAAATGTGCCAAGTCTTCAAAAGACCCTTTTCAGAGCCTGCAGCCAACATCGGAGTCTGGCAGtTGGCATTCGAGACGATGAGTGTTATTGCGGTCATCACCAACTGTGCCTTGATCGGTATGTCGCCCCAAGTCAAGTCCTTCTTCCCCGACTCGGAGACGCACCTCATCATGCTAATAGTGGCCGCAGAGGTAAGTCTGAACACTGTAGCTCGCTGA

Function

NR:

description
PREDICTED: anoctamin-10-like

GO: NA

KEGG:

id description
K19327 ANO10, TMEM16K; anoctamin-10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002540 True 1641 mRNA 0.49 9 18337756 18346198

Neighbor

gene id symbol gene type direction distance location
AMCG00002534 cnot10 coding upstream 176192 18145212 ~ 18161564 (+)
AMCG00002535 LOC107751889,LOC107704104 coding upstream 286840 17998046 ~ 18050916 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 526029 17806735 ~ 17811727 (+)
AMCG00002525 NA coding upstream 662646 17661879 ~ 17675110 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding upstream 676583 17652475 ~ 17661173 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding downstream 110853 18457051 ~ 18458790 (+)
AMCG00002553 NA coding downstream 453662 18799860 ~ 18810379 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 1021118 19367316 ~ 19385301 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 1060860 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 1683960 20030158 ~ 20033860 (+)
G123833 NA non-coding upstream 285418 18051012 ~ 18052338 (+)
G123808 NA non-coding upstream 397123 17926699 ~ 17940633 (+)
G123797 NA non-coding upstream 577561 17695860 ~ 17760195 (+)
G123653 NA non-coding upstream 1189420 17091975 ~ 17148336 (+)
G123916 NA non-coding downstream 158690 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 208287 18554485 ~ 18556562 (+)
G123950 NA non-coding downstream 237971 18584169 ~ 18586027 (+)
G123993 NA non-coding downstream 498170 18844368 ~ 18861644 (+)
G123997 NA non-coding downstream 516480 18862678 ~ 18863965 (+)
G123807 NA other upstream 353026 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1351850 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1377674 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3976220 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 5208059 13125378 ~ 13129697 (+)
G123989 NA other downstream 485816 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 727495 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 783869 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 1895650 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4641347 22987545 ~ 22990164 (+)

Expression


Co-expression Network