AMCG00002542


Basic Information

Item Value
gene id AMCG00002542
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18320139 ~ 18335125 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002542
ATGGCCGAGGAGACTGTGGCAACGGAAAGAGGAGCGGTTCATCGAATTGTGATGATTCTTGGTATACATGTTCTGTACCACAAATTCTTGAGGTTCCTGGACTCTACCTCAAGGTCATGGTGGATAACCAGTTGGCTTCCGTCATGGAACCCAACATCTCTATCACAGTTAAAAAATGCAGAGGAGAAGATGCTACagtcAATTACAGCAACGTTTTCCAAGCAGAATATTCCGATATCCAATGGAAACATGATATGGACGCTTTCCTTTAAGAGCAACACTGCCAGTAAGATCCCCCTGGTTCTGATCCACGGCTTCGGTGGAGGAGTAGCAATGTGGGCGCTCAACCTGGAAGCCCTGTCCCAGCAACGAACTGTATACGCGTTTGACCTGCTGGGGTTCGGGAGGAGCAGTCGGCCCCAATTCAGCAGCGAAGCGGAGAAGGTGGAAAACCAGTTTGTGGAATCAATAGAAGAGTGGAGGGTAAAAGTGGGCGTGGAGACCATGATTTTGCTGGGACACAATCTGGGTGGTTATTTGGCAGCTGCTTATACACTCAGATACCCATCAAGGATTAAGCACCTTATCCTGGTGGAGCCGTGGGGTTTTCCCGAGAGACCCAACACCCCTGAGCAAGACAGGCCGATTCCCGGCTGGATCAAAGCACTGGGAGCAATGCTGAGCCCCTTCAACCCGCTGGCTGGGCTGCGGTTGGCTGGACCTTTAGGACCTATACTGGTTCAGCGACTCAGACCAGACTTCAAAAGGAAATACGCCTCCTTATTTGATGACAACACCGTGACAGAATACATTTATCACTGCAATGTTCAGATACCCAGTGGAGAAACGGCTTTTAAGAATATGACCATTCCATATGGGTGGGCGAAGAGGCCAATGCTGCAGCGAGTGGCCCTGATTCAAGATGACATCCCCATTACGGTGATTTATGGGGCTCGCTCCTGTATAGATGGCAACTCTGGCAGTTCAGTCAAAGAAATAAGGCAGAACTCGCATGTGGAGACAATCGCAATACGAGGTGCAGGCCACTACGTCTATGCCGATCAGCCTGAAGATTTCAATCAAAGAGTCTTACAGATCTGTAGCAATGTGGAGTGAAGGAGACGGCCTCTCCGTTGAAACATGCAATAATCGCCGCTTTCACACCAGGGTGGAAGTCAACGTTAACCTATGAAAGGCACTCCTTTGGAAATTAGCCACAAGAAAACCTCCAAATCCCTCATATTTTGCACTCGCACCCGGGGACTTTCTATGGCTACACCGCTCGATAGTGCCTtcattatacagtatttttttattccattaacACACATTGATGACATAGGTAgatttttgtggtgttttttaaattgaaagaaaaggaaggggGTGAGTAGGAacttgaaaagagaaaaatattcaTCTCATACCTTGATGGAAATTTTTCTGATGTTACCACTAGAAACCATAGTACAGATCCTCAGaagagaatacattttttatgtgtattttgttttaattctcttGCTTTTACTATTGGCTTCTGactttttccttctctttctgtatatagtatatatatgattataggTTGGGTTTTTTTGGTCTGTGACTGACTATTTCCCcttattttattcagattttatctttaaaatgtcagtttacTCCATTTTGTACTAATAGAAGATGTTTATTAACaaagaaatgttaatattatcctttcatttatttaactattattTGTGCGCTCATAATGCCCTGGACCATACTAATGATAATCAACGaatgtaaagatttttttaaaaaaagtattaatccCCTTCAAATACTGTGAAATTGTTCTCCTCCTTTTGTAAAAAGGATGGAAAAAGTCCTATCCTAACATTTTGATTACAACTAGCCTTGCATATCAATACACTGACATAAATATCTCATTTTGGCATTCGGCACATTTTTGTCAATTTATGACCGACTTTACTGGAACAGGAATAAAATGCTTTCTTCATCTTCATTATAGTCACTCAATTTCTTTTCTCAGGAGAACACAGAGGGGAACACATTGACTTGAAGAGTAGTAGTTCCGGTTTGAATGTGAGGCCCCAGCCGTCACAATGACCTCCTTTCAAAGTCAATCTAGTATGCTCCAAGACGTATTTCATCAGAATATCATCAAAATAGCACATCACCTGTTCTGCACGATCCAAGCAGTTGATGAACATCTCTCAATTCAGTTCATAgcatatacattttctacatcTAACGTATATGTAAACTGGACTAACATGTATGTCTTGTGTATAACATTATGCTACTGGGTAACATCCTTTGtagaaatatttaattcataataatgtgCATCCTCTAAAATCTATTGTATAGTGTGAGACTCCCTGTTTTCAATGCAACACATTGTAActtattcatttagttttacAATATAAAGTTAGACACTGTTGGTACTGTGAGCAAAACTAATCAAGATATTTTaggacttttgttttgtaaattattttaaaatttctaCACTTAATATATTTTGGTTAGAATTGAGTCTGGATTAGAGGAGAGAGTTCATACATTAGCACTTAAATTCTCCACAGAATAATATTATGTAGACCTTGAGGCAAATGTAAGCTTTAGTTTTGAAGTGTTCATTTTCTCAAGTGTTGCTGCCAATAGTAAAGGTTAGTATAGATAGGAGTAGATGATCTGCACAAAGCAGCTTGCTGTGTAAGATCACTGAAGGGATTGCTTAGAGTTCTGCCGAAGGAAACATGAATGGTTCTCTTTCAGTTTAATTCACCATCTACTTGCTCTAGCAACAGGTCTTGTcgtttttattttagatcatatttgtatttatgaaaaaaacaatctgccCTGAATACTTTCAGTGAGAttattctacattttttttgtattgtagtaTATACCTCATATGATGTACGTTACCAACCACCACTGTGAATCATGCGTCTTCCTTTGGCTCctcttgtctttttatttaccATCAGTTACAGTAGGGAGAGACTTTCGTGTCAGTCTGAGATCCAAGGAAGCAGAAGGGGCAGTTTTCTGGACACTTTCAGACCTGTCCTCCCCTGCCCGAAGTAGATAGAAACAAGGCAAGCACAATTCCAAGCAGTCTCTTTATTTGATGTGACTTTGCTATTGTGTGGGTGATCGAAACTTGAGTCCCTGTAGAGGAGTTGTCGGCCTTAAGTGGTCCCTTTGGATTGGACTGTGGTTAAGCCAGGATATCATTAGGTTGTTTGGCACATTTTAGTCCTATTCTAATCAAACACGCACAGAGGAAGCCATAAGAATCATTTATGCAAAAACTAAGCATGTGTGCACAATAGTGGGCAATATAGCTTCAGACCTCAGAATATTTattggtttttattattactattatgtatttaaatacactgaGTGAATGTAAAGCAATACATCACTGTACAAGTATACATGTTAAGTGTACCAAATAGAAAAGCTGGGAACAAACAactgtcttttttgtttttcaaaactgctATTACTGCATAATTGTGTGTCATAAGGTTTTCTCTGTAAATATGTGAAACTTCTGTCATCTTCTAGCCAAGCAATTTAATGCTCTCTTCCTTTTTAACCCTCTCATGATGTTGAAACTCTGTGCAGAGCATTGCTTAGTTTCCCAGAAACGTTTTCTCTCCGGGTACTGTTTAACAGTTTACTCTTTCTGTATTCCTCAGTCACTGCAGAACAATCAGGAAGTTGTATGAATgacctgtaaataaatacaatatttcatcTTTTCAA

Function

GO: NA

KEGG:

id description
K13699 ABHD5, CGI-58; abhydrolase domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002542 True 3801 mRNA 0.39 8 18320139 18335125

Neighbor

gene id symbol gene type direction distance location
AMCG00002538 NA coding downstream 78918 18226968 ~ 18241221 (-)
AMCG00002537 NA coding downstream 95289 18215795 ~ 18224850 (-)
AMCG00002539 trim71 coding downstream 115656 18203377 ~ 18204483 (-)
AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding downstream 137512 18172131 ~ 18182627 (-)
AMCG00002532 NA coding downstream 258074 18058532 ~ 18062065 (-)
AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding upstream 48695 18383820 ~ 18389641 (-)
AMCG00002543 snrk,LOC107101967 coding upstream 91599 18426724 ~ 18427338 (-)
AMCG00002544 NA coding upstream 147608 18482733 ~ 18492180 (-)
AMCG00002545 rpl14 coding upstream 169772 18504897 ~ 18508670 (-)
AMCG00002549 NA coding upstream 193528 18528653 ~ 18545075 (-)
G123876 NA non-coding downstream 114007 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 267807 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 504673 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 645029 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 1081595 17234370 ~ 17238544 (-)
G123926 NA non-coding upstream 134109 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 249584 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 447020 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 948753 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1966947 20302072 ~ 20334454 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 278566 17933464 ~ 18041573 (-)
G123829 NA other downstream 330674 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 613850 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1345838 16958162 ~ 16974301 (-)
G123585 NA other downstream 1480417 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3311930 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3566167 21901292 ~ 21902597 (-)
G124719 NA other upstream 4750869 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4846796 23181921 ~ 23192656 (-)
G124829 NA other upstream 5926440 24261565 ~ 24261823 (-)

Expression


Co-expression Network