AMCG00002543 (snrk,LOC107101967)


Basic Information

Item Value
gene id AMCG00002543
gene name snrk,LOC107101967
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18426724 ~ 18427338 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002543
ATGGCAGGTTTCAAACGAGGGTACGATGGCAAGATTGCGGGACTGTACGACCTGGATAAAACGCTGGGCCGGGGCCACTTCGCCGTGGTCAAGCTCGCCCGCCATGTCTTCACGGGAGAGAAGGTGGCGGTGAAAGTCATCGACAAGACCAAGCTGGACTCGGTGGCCACGGGTCACCTCTTCCAGGAGGTCCGCTGCATGAAGCTGGTGCAGCACCCCAACATCGTTAGGCTGTACGAGGTCATCGACACCCAGACCAAGCTCTACCTGATCCTGGAACTGGGCGATGGCGGAGACATGTTCGACTACATCATGAAGCACGAGGAAGGGCTGAGCGAGGAGCTGGCCAAGAAGTACTTTGCCCAGATAGTCCACGCCATCTCCTACTGCCATCGACTGCATGTGGTGCACAGGGACTTGAAGCCCGAGAACGTGGTGTTCTTCGAGAAGCAGGGGTTGGTCAAGCTCACCGATTTTGGCTTCAGTAACAAGTTCCAGCCGGGCAAGAAGCTGACCACTAGCTGTGGGTCTCTGGCATATTCGGCCCCGGAGATCCTGTTGGGAGACGAGTACGATGCTCCGGCAGTCGGTAAGTACCTGATTAAAGGACAGTGA

Function

symbol description
snrk Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in protein phosphorylation. Predicted to be located in nucleus.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: SNF-related serine/threonine-protein kinase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002543 True 615 mRNA 0.57 1 18426724 18427338

Neighbor

gene id symbol gene type direction distance location
AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding downstream 37083 18383820 ~ 18389641 (-)
AMCG00002542 NA coding downstream 91599 18320139 ~ 18335125 (-)
AMCG00002538 NA coding downstream 185503 18226968 ~ 18241221 (-)
AMCG00002537 NA coding downstream 201874 18215795 ~ 18224850 (-)
AMCG00002539 trim71 coding downstream 222241 18203377 ~ 18204483 (-)
AMCG00002544 NA coding upstream 55395 18482733 ~ 18492180 (-)
AMCG00002545 rpl14 coding upstream 77559 18504897 ~ 18508670 (-)
AMCG00002549 NA coding upstream 101315 18528653 ~ 18545075 (-)
AMCG00002550 NA coding upstream 127460 18554798 ~ 18572982 (-)
AMCG00002547 grb10,LOC106605415,LOC106579904 coding upstream 158740 18586078 ~ 18602108 (-)
G123876 NA non-coding downstream 220592 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 374392 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 611258 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 751614 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 1188180 17234370 ~ 17238544 (-)
G123926 NA non-coding upstream 41896 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 157371 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 354807 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 856540 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1874734 20302072 ~ 20334454 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 385151 17933464 ~ 18041573 (-)
G123829 NA other downstream 437259 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 720435 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1452423 16958162 ~ 16974301 (-)
G123585 NA other downstream 1587002 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3219717 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3473954 21901292 ~ 21902597 (-)
G124719 NA other upstream 4658656 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4754583 23181921 ~ 23192656 (-)
G124829 NA other upstream 5834227 24261565 ~ 24261823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110513400 snrk misc NC_048566.1 CM023220.2 13250306 ~ 13324680 (-)