AMCG00002544


Basic Information

Item Value
gene id AMCG00002544
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18482733 ~ 18492180 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002544
GGCATCGAAAGCCCCAAGATTGTGGTTGAAGATGCGCTGCAAAAGGAGATCTGTGGTCGCATTCAGCTTTCTTTTTACTTTGTCTGTGGTCATGATAAATAGCTTTCCATCCTTCCCTGCCGAGAGCCACAGCCTGACGCAACTGGAGCTTCATGCAGAGACTGGCAGGCCAGAAGCAAACTTGAAGAAAAGAGCATCGGTGCCCTTACGTAGTCTACCTCTGAATCAAATCCACAGAAACTGGGAACCTGAAAGGAGGAAAGAGACGGCAAAGCACTTGGCAAACGAGAAGCCTGAACACCAGCCAAGCGTTAATAAGAAAAGCTTCCAAGAGAAGGATAAGAGGCCCTCCTTTTCTAATGGACGTCCTGTGAAAGATCACAAGAGTAATGCAACAGCCACAACAGCCAAGAGGAAAGCGAAGGGAAAGTCCGGGGGAATACGGCAATCCCAGGGATCATCGGTGCAGTCGAGGGGCAAGCCACGAAATGGCCACTTGCAAGAACAACAACATGGTCGGCATCCCCACCTTTCAATTCAAGTGCCACCTCCTAGTCGAGGTTTGCATGATACGTTCGCCGTCCAGAACCTTTCAGACAGCTTGCCATTGTTAAAGCACAAATGCATCCCAGATGCGCGGGACGATGCTGGCAGAGCAGGAAAGCTCATAAACCCCTCGTTGGCTGGCGGAAAGCCATCTTCTAAAGATATTAGGAAACATGAAAGGGAATCTGAGCCTCTGGATAGGAAGAGGCCCTACTTGTCAGGTCAGAGGAGAGATGGATGCAAAGGAGACGGATTTAAAGAGGCCAGGCAGAAGCTGACTACTTGGTACAGCAAACCGAAAGAAGGTGCTTTCTCGGACGAGGTGAAGGAGAGCATAAGAATTGGAAGTCATCCCCCACCTTGGTTCAGTCAGGATGACATCAGGAAGATGAAGTTACTTGCTGATGGTACTGTAGTTAGCAAGACCAGAGTCCCTGCCCATGGGCAAGTGCTCAAGATTGGACTCCGACAAAATGGTTCCCAAGCCCCTGGAGATGGTGAAAGACACTGCCTGGATGGTCTCTGTGCTTTGATCAAGCGTCCCGATGACTGGTTTGAAGTCTTTGCCTTCCATCTGGACAGGGTGTTGGGGTTGAATAGGAGTCTGCCTGTTGTGGCTAGGAGCTTGCGCAGTGATCTTCTCCCCTACAAGTTCACAAGCGGGACTGTGAGGCCCGTGGTCTGGTGGGACCCCGACATTCAGCACTTGGCCGATGACAACAACGACCAAAACTCCTTCCCCCTCTCGTGGCTGCAGTACCAGGATGTGCTGAGGAAGCAGTGCGGTGGTACAGATGCCACCAATTCAGGCCCTTGTGTGGGGGTGCGGCATTCTGAATGGGGGAAGCTGGCGTTATTTGATTTTCTGCTACAGGTCAATGATCGACTGGACCGTTACTGCTGTGGATTCAAGCCCGACCCGTCCGAATCCTGTGTGGATGATCTGCTTCATGCCAAGTGCAGAAATCCCAAGGAGCTCGTGCTGGTACACATTCTGGTGAGGAAGGCCGATCCCTCCCGGCTGGTGTTCATTGACAATGCTGGAAGACCTCTCCACCCCCATGACAACCTCAACTTCCGCCTGCTGGAGGGTATTGAGGAGTTTCCTGAGAGTGCGGTCTCCGTGCTCAGATCCGGGTGTCTGGAGAACATGCTGCTCCAGTCACTGTACACGGACAGGGAATTCTGGGAAAGCCGGGGGAAACTGAAGAGCTTGAAGCAACTCATTCACAATGTAGACAAAAGAGGCAAAATACTGCTTCAGTACATTCAGGACAGGAACTTGAAACTCAGTACAGAACTTTAAAATGGACATTGTGTACAACTACCTGAAACCAACtgcctttttccaagtgcaGTTTTTGGTTTGTGTCCATCTTCCCAAGACCTGATTTTTTGCTACAGAGATCAATATAAAGTATTCATATCATTGCAgtttgcacaatttaaaaagttttcttctcagttttaagaatttaaattgaatgttgatgtttttgtttctttaagggTTGGTTGAATGGCTACTCATACGAAATGATAGACACTGCATTCTATATACGtagttgtgtgtgcgtgtgcgtgtgtgtgtgcatgtgtgtgtgtgggtgtcagtGTTGGTGGGTGGCTGGGGAGTCTTAAGCCTACACCAGAAATGATGAAGCATTCGATTTCTGTGTTCCAGCCttgttgtgtattgtttatttgaaacaagAAAACCTACACACTGGCACTTACATCAGCAGCAGCTTAGAAAAGGCGACTGAGCAGTTGCTTATGTCCTCCCAATTTAAATGAGCAGAGgatcaatttaaaaagcataccAGCTGCTTGAGGTCAAAAGCTgggttattgtattttttgtatcataTTTTTTACAAGGCTTGGAGGCTTTCATGCagttcaaaatactttttttgagGAAATGTAGCTCTGTATGCAATGGTTTGGCTTTTgatcattttttccatttttgatAAAATTCTTGTGATTACTTAAAATGACCTACATTCCCCTTATCTGCTTAAATGATAGAGCCCATTCTAGCTTAGTTTACATAATGGCatagttttatagttttatatatatatatatatacgatgTAATTATGACTGGCTTTAATTCCGAGCAACGAAGCCAATGAAGTCTTTGAACCGAACAATAATGGCACCCTGTTGTTTTGCTAGTGGAAATTTAAAGAACCATCTGCAACAGTGTGTTGTTCTTGTCAATCACATCCCATTTAAATGAAAGTGCaagatgaattaaaaatgtatttttctttgaaaatgtatttgatatgtCAATACAAGTTTTAAGACCCCAGATccaccttttttgtttttaaggccTGTAACCAAAGATCCTATTTCATTGTGCATCTCATGTCAAGATAAATATTGCCAAGCATGCGAGTGAAAGAGAAAATCTGATCAAGCTTAACATAACTTCAGTATAACTTCCAAACTTCATCTCATCTCTATGCATTTTGCTGAAGGGGAGTATAAAGCTGCTTCTTGTAATTTACTGTTTACTCCCTACTGTGCAGAAAGGAACAGAAATACAGCCAAATAATACCTTAAAAAGGATATGCTCCTTGTAATCAAGAGATATATGCTTCTTCTGGCATTTTTTCATGTTCCAAGagttataaataatgcattatggCTTGTATCTTGGGGTGATTACAGATTCTGACACCACAGCAAGAAAATGCCCTAGTCTACTTCAAGACCGCGTTGCTCCCCCCTACTCTTTGAAGGTTAATGTGTGGCAAAACAAATGCACCGTGGTTTTCATGTAAACGAGAACTGCAAGCTGGGGTAGGGCTTTTAATTCAGTTTGCATGGGTGAGTCTTCACTGTCAGTTTATGTTCAAACCGattttgtttaggttttaaaatgtgtttatcaaGATATAGCCATATTGGTATTAGGTCAGCCAGGCCATTTGCATTTAATAAGGTGTTACCAAAAACTAGATGGACCATTTTGatattacacaaacaaacttcTGGAAAAGTATGACAATATCCTCATGCCCGGTGCATAGAGGAAAGCATATCTCCAATGATCAGCAATTTATTATGGTCAAAAATGTTGCTATCAGctatattatgtttaattatgattttgtatttcataaaatatGATGTCAGCCACTTTGGGTAGGGTTTTAATAAAGAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002544 True 3734 mRNA 0.44 4 18482733 18492180

Neighbor

gene id symbol gene type direction distance location
AMCG00002543 snrk,LOC107101967 coding downstream 55395 18426724 ~ 18427338 (-)
AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding downstream 93092 18383820 ~ 18389641 (-)
AMCG00002542 NA coding downstream 147608 18320139 ~ 18335125 (-)
AMCG00002538 NA coding downstream 241512 18226968 ~ 18241221 (-)
AMCG00002537 NA coding downstream 257883 18215795 ~ 18224850 (-)
AMCG00002545 rpl14 coding upstream 12717 18504897 ~ 18508670 (-)
AMCG00002549 NA coding upstream 36473 18528653 ~ 18545075 (-)
AMCG00002550 NA coding upstream 62618 18554798 ~ 18572982 (-)
AMCG00002547 grb10,LOC106605415,LOC106579904 coding upstream 93898 18586078 ~ 18602108 (-)
AMCG00002552 NA coding upstream 137469 18629649 ~ 18632830 (-)
G123926 NA non-coding downstream 13126 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 276601 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 430401 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 667267 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 807623 17660067 ~ 17675110 (-)
G123961 NA non-coding upstream 92529 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 289965 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 791698 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1809892 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 2048127 20540307 ~ 20540523 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 441160 17933464 ~ 18041573 (-)
G123829 NA other downstream 493268 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 776444 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1508432 16958162 ~ 16974301 (-)
G123585 NA other downstream 1643011 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3154875 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3409112 21901292 ~ 21902597 (-)
G124719 NA other upstream 4593814 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4689741 23181921 ~ 23192656 (-)
G124829 NA other upstream 5769385 24261565 ~ 24261823 (-)

Expression


Co-expression Network