AMCG00002546 (pomgnt2,LOC106605419,LOC106579937)


Basic Information

Item Value
gene id AMCG00002546
gene name pomgnt2,LOC106605419,LOC106579937
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18457051 ~ 18458790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002546
ATGAACGTGGCGGCTGTGCTGAACGGTCTGCTGGTGTCTGTGCTGGCGGCGGTGCTGTGGAAGTACGCCAAGCTGCGAGAGCACGCATCTCTGGTGGAAGAAGAGCTCCTCCTGACCCGCCAGTCCCAGGAGCTCTCCCAGGTCCGTATCGATTACCATGCCGCCCTGCAGGCCCTGCAGGAGAAGGGCACCCGCATGGTGTGCACCGGGAAGATGCACACCGACCGCATCTGCCGCTTCGACTACCTCTGCTACTCCACCGAGGCCGAGGAGTTTGTCTTCTTCCACAGCAACTCCTCGGTCATGCTTCCCAACCTGGGCTCCAGGAGGTTCCAGCCTGCTCTCCTGGATCTCTCCTCCGTGGAGGACCACAACACGCAGTATTTCAACTTCCTGGAACTGCCGACACCCGCTCTCAAATACATGCCCAAACCCGTCTTTGTCCCCGATGTGACCCTGATCATGAATCGGTTCAACCCAGATAATCTGATGCACATCTTCCACGACGACCTCCTTCCCATCTTCTACACCATGAGCCAATACTCAGACCTGGACGAGGAGGCCCGCTTAGTCTTCATGGAGGGCTGGAGCGAGGGAGCACATTTCGACCTCTACCGGCTGCTAAGTGGAAAACAGCCCCTCCTGAAGGAGCAGCTCAGGAACTTCGGCAAGCTCCTGTGTTTCACAAAGTCCTACGTAGGGCTGTCCAAAATGACCACCTGGTACCAGTATGGCTTTGTTCAACCACAAGGCCCCAAAGCCAACATATTGGTGTCAGGAACGGAAGTCCGTAAGTTCACACGCTTTCTGATGGCTAAACTCAACATAACCAAGGAGGAGAGCCCTGAACCTGAGGAGTACATTGTGGTCTTTAGCCGTAGCATCAACAGGCTCATCCTTAATGAAGCCGAACTAATTTTGGCTCTGGCTCAGGAGTTTCAGATGAAGACGATCACGGTGTCTTTAGATGAGCACTCCTTCGCAGATATCGTACAAATAATCAGTAAGGCGTCAATGCTTGTCAGTATGCACGGGGCTCAGCTGGTGACCTCACTCTTCCTGCCCCGCGGCGCTATAGTGGTAGAGCTTTTCCCATATGCTGTGAACCCTGAGCACTACACGCCCTACAAAACTATAGCCTCCTTGCCTGGCATGGATCTTCAGTATGTGGCCTGGCAAAACACCAAAGAAGAGAACTCCATTGCGTTCCCAGACAGGCCCTGGGATCAAGGCGGAATAGCCCATCTAGAAAAGGAGGAGCAGGATCGCATCTTAAAAAGCAAGGAGGTGCCTCGGCACTTGTGTTGCCGTAACCCGGAGTGGCTTTTCCGCATTTACCAGGACACTAGTGTGGACATCCCCTCTCTTCTTGAAGTACTGAGGCAGACGGTGAAGTCTAAGCCCAATCTGAAAAAGTTTAAGCCGGCCAGCACAATTCACCCCGGTAAAGTGCGGGAACCCAAATGCCAGGCTTCTGTACAAGGAACCAACGAGGCGAAGCTGACAGTGTCGTGGCAGATCCCTTGGAATCTGAAGTATTTGAAAGTCAGGGAGGTCAAGTATGAAGTGTGGATACAGGAGCAAGGGGAAAACACGTATATGCCTTACATTCTTCCTCACCAGAATTATACCTTTTCCGAGAACATTAAGCCTTTCACCACGTATCTGGTGTGGATACGCTGCATTTTCAACAAAACTCTTTTAGGCCCCTTTGCAGATGTTCTGATGTGTAGAACCTAG

Function

symbol description
pomgnt2 Predicted to enable acetylglucosaminyltransferase activity and protein O-GlcNAc transferase activity. Acts upstream of or within brain development; muscle cell development; and retina development in camera-type eye. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in basal plate midbrain region; heart; nervous system; and somite. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A8. Orthologous to human POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)).

NR:

description
PREDICTED: protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

GO: NA

KEGG:

id description
K18207 POMGNT2, GTDC2; protein O-mannose beta-1,4-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002546 True 1740 mRNA 0.53 1 18457051 18458790

Neighbor

gene id symbol gene type direction distance location
AMCG00002540 LOC106606077 coding upstream 110853 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 295487 18145212 ~ 18161564 (+)
AMCG00002535 LOC107751889,LOC107704104 coding upstream 406135 17998046 ~ 18050916 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 645324 17806735 ~ 17811727 (+)
AMCG00002525 NA coding upstream 781941 17661879 ~ 17675110 (+)
AMCG00002553 NA coding downstream 341070 18799860 ~ 18810379 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 908526 19367316 ~ 19385301 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 948268 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 1571368 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 1770937 20229727 ~ 20238940 (+)
G123833 NA non-coding upstream 404713 18051012 ~ 18052338 (+)
G123808 NA non-coding upstream 516418 17926699 ~ 17940633 (+)
G123797 NA non-coding upstream 696856 17695860 ~ 17760195 (+)
G123653 NA non-coding upstream 1308715 17091975 ~ 17148336 (+)
G123916 NA non-coding downstream 46098 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 95695 18554485 ~ 18556562 (+)
G123950 NA non-coding downstream 125379 18584169 ~ 18586027 (+)
G123993 NA non-coding downstream 385578 18844368 ~ 18861644 (+)
G123997 NA non-coding downstream 403888 18862678 ~ 18863965 (+)
G123807 NA other upstream 472321 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1471145 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1496969 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 4095515 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 5327354 13125378 ~ 13129697 (+)
G123989 NA other downstream 373224 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 614903 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 671277 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 1783058 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4528755 22987545 ~ 22990164 (+)

Expression


Co-expression Network