AMCG00002548


Basic Information

Item Value
gene id AMCG00002548
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18701895 ~ 18713091 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002548
GTCTGTGCAGGGCAGCCGCTTGGACCACAAGACTGAACAAGACCTGGCTgagatggaggaggagacggTTTCCACGGGAAGCAGTGGAAGTCTCCCAGACAATGCCTACGCTGCCTCCGAGGGCACAGCCGAGGACTCGGGGGTAGTCAGCTCGCCCTCAGACATGGCGCACCCCGCCTCGCCTGACGACAGCCTGGTGATGGAGAGGCAGCTGTCCTTGGATCGAAGCTCCAGTGAAGCTGATGTCCAGAGTCAGTCCAACGCAGGCGGTGTCATATCCAAGGACTTCTCCAGCGACAGTGATGAGGGCTGTACCACCTGGATGTCTCATAGCAGACACAACAGTGATGTCTGTCCTGTGGAAACCCAGCCGGTCAAAAACACTGATCACTGTGCAGAAGACCTGGACCTCACAGCTCAGCTGCATCAGACCCTTGCTGACCTGGAAGCTGATTTAGCAGTCATAGAACATGCAGAAGTAGCCACAGATTCCTCTCCTGATCCCAGAGGACAAATTGACACATCCTGCCTGGGTGATATACCCATCTCAGATCTCGATATGACCGTGCCAGTGACAACTATAGATGAAGTCTGTGAGGATTACAGGTACAGCATGACTGACTATGCAATAGCTGTGTCACAACCAGAAAGGGAAATAAAGAGTGGAAGACGTTATCAAATAAACAGTGATCTAGAAAACAAGAATAACAACGCTGTCACATCTAACAAACAGCCTAACGCTGACAATAATGGGCAGATTCCCAGGAATGATTCGGAAGAAAAGTGGAGGCAAATTCCAGCGACAGGATTCCAATTCAGCACACAGAAGGAAAACGAGAAACAAAATATCCTTGGACTCGTGAAAAGTCCCAAGGCGGTTTCCAGAGTCCAGAAGTGTCCAAATGACCAGGCAGGAACTCCAAAACCACAGGCTGTAAACCAGACTGAACCGAAGGAACACGCTGAAGACGGCGAGTCTCTTACATCTGCTAGGTGGCAAACGGCCCAAAGTAAAATAACACAGAGCTATGTTTCACGACTTGGCATGAACACATTCACTGTGGTTCCACCCAAACCGGCTTACGATCAGATAAGAAAGCCAGGTGGGTCTCTGGTGACTGGCGCCATTAAGATTGATGCCCAGGGCAATCTCATCAATTCGAACGAAGCTGAGAACCAGCATAGAAGATTGTCTGGTTCTTGTAGCGACTCCAGGGAGACTCTTCTTGGGAAAgccaaggcattctggagctcAGCCGAGCAGCATGACCCCGACAACACCAGCAAGACTGTGGTCACAAAAGTCAAGTATCTGGGAGCCCCTAATCCAGAGCCATCAGTCCCATTCAGCAAAAAAGGACCTCCCGAAGAAGCAAAGTCAATAACAGTGATGGAAGTAAAGGGGGATCTGTCGAAAGATACGTCCCAAGGAAACAAGAACGAGCCTTTCAATCTTGTACCCACAAACCAGCCTGTGAAATCTATGTCGAAAGTAGAGTCTAGAAATGACCTTTCCTTTCTTAAACCGCCCAGAAGAACGTCTAGTCAGTACGTGGCTTCAGCTATCGCAAAATATACCGGGATGCCCACCACAAGGAGTGGTTCTGTAAAAGTGGACCTGGGAAGCACTCCAGCCAGCAGTGCAATATCACAGCCCTCCGTCTCTAAACCGTCCATTCCAACAAGGCAAGGTTTTTCAAATGCTGATAGATTCAGGCATGTAGAATCAAACACACAGCAATCTCAGGTTTCTACAGGCTTGTCTAAGACAGTAGAAGCCACCATGTTGGCTGCGAATCTAAGACAATCAATGAGCTCTCCAGATTATAATACAATGTCAAATTTCCCAATGACAACTGTTAAAGAAAGAGATTTTGCAGCAGAGCAAAATAAAAGCCTCAACTGCAAAACTGTTACTGTTGAAACTAACAGCGTGTCACCAGAAGCAAATGCAAAGATGAAACCCATTTCCTTTCAGCCATGCAAACCACCACCTCTTCAGCGACCAAGGGAAGAGGTGCAAACGCTAAGGTCTGCTCCTAAAGTCGAATCCGCTTTTGGTCGCTCCCTCCATGACCCTTCAACTGCACAGACCATCAAGAAAGATCTTCCTGAAGTAACAGGAAAATCAAACCTGCGGCTTCGATCAGCCCCAAGTACACCCACAGATTTCAATCCTCCAATCCCTGGCGGTATATTTGGTCCAGTCAAGAAGTTCAAGCCTGTTTCTCTGAAGCCATTACAGAATGAGGCCTCATTGCATACCTCACTAATGGAGGCCATCCAGGCAGGTGATGGGAAGCAAAGACTTAAAAAGACATCTGATACTACAAGAGAAAGCACTCTGAAGAATACGGTCTTTGTTGAAGCAGAAAATGAACGGTCAGCGCTCCTCTCTGCAATCAGAGCTCAAAATAACTCCTCAAGACTTAGGAAGACAAAATCATCAGCTGCTGAAGAGCTCAGagatatcaaaaatacagaGGAGACAAATGGTGGCCAGGACACTAAAGTAGTTCCTCCCTCAATGCCACCTCCCCTTCCTCCgtcttttcctcctcctcctcctcctcctccaccgtCAGCCAACTCTTCGAAAATGAAGCCCTCAAATGTAACGTTCAATGCCAATGGAAACCCAGAGCAGGCACGGGAAGCCCTGCTGGAGGCCATCCGCACCGGCAGTGGGGCGGCACGTCTGAAAAAGATCGCCAAGGCCTCCACGTGCCCAACCAACACTGAAGACGACACA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002548 True 2752 mRNA 0.49 6 18701895 18713091

Neighbor

gene id symbol gene type direction distance location
AMCG00002552 NA coding downstream 69065 18629649 ~ 18632830 (-)
AMCG00002547 grb10,LOC106605415,LOC106579904 coding downstream 99787 18586078 ~ 18602108 (-)
AMCG00002550 NA coding downstream 128913 18554798 ~ 18572982 (-)
AMCG00002549 NA coding downstream 156820 18528653 ~ 18545075 (-)
AMCG00002545 rpl14 coding downstream 193225 18504897 ~ 18508670 (-)
AMCG00002551 NA coding upstream 10306 18723397 ~ 18759586 (-)
AMCG00002557 NA coding upstream 73029 18786120 ~ 18786641 (-)
AMCG00002556 NA coding upstream 73582 18786673 ~ 18786954 (-)
AMCG00002555 NA coding upstream 158272 18871363 ~ 18895560 (-)
AMCG00002554 trioa,LOC108426039,LOC107669652 coding upstream 187182 18900273 ~ 18978957 (-)
G123961 NA non-coding downstream 115965 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 232288 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 495763 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 649563 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 886429 17811518 ~ 17815466 (-)
G123981 NA non-coding upstream 69054 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 570787 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1588981 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 1827216 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 2266006 20979097 ~ 21116735 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 660322 17933464 ~ 18041573 (-)
G123829 NA other downstream 712430 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 995606 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1727594 16958162 ~ 16974301 (-)
G123585 NA other downstream 1862173 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 2933964 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3188201 21901292 ~ 21902597 (-)
G124719 NA other upstream 4372903 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4468830 23181921 ~ 23192656 (-)
G124829 NA other upstream 5548474 24261565 ~ 24261823 (-)

Expression


Co-expression Network