AMCG00002549


Basic Information

Item Value
gene id AMCG00002549
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18528653 ~ 18545075 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002549
CCAGCATCAACTGAAGCAGACAAGTCTCACTCCTGCGAATCAATGagaaactgtcttcagcaaagGATACTaatgtgatttttctttatttttttcttttataactAGGTCTTTCTACAGAAAGGAAATGGTATCAAAATTGGCTGCTGTTATCgctcttttctttctgttggcGAGCCTGGCTGTGATTGTTGCAGTGGCTGTCATCCAGGTCCATAAAAAGCACTATTTGTCACCAGGACTAAAGTATGGGATTGTTCTTGATGCTGGTTCCTCACGGACCACGGTGTATGTGTATCAGTGGCCCGCTGAGAAGGAGAACAACACAGGAATTGTCAGCCAGACTATGAGTTGTATGGTTAATGGTTCTGGTATCTCCAGTTTGACTCTTAACCCTCGACAGGATCAGAAAAATCTCTGGAATACCTGGGTTCGCCCTCACGGAGCCGAGACCATCGGCTCACTGGATCTAGGTGGGGCTTCAACTCAGATAGCATTCGCTCCGGCCCCTCCAGAGACTCCCAGCTCACCTGGAGAGGATTTCAGCCCTGTCCGTTACAACAGAGTAATGTTGTACGGTTATGCCTATGAAGTATACACTCACAGTTACACTTGCTATGGCAAGAATGAGGCGGAGAAGCAAGTTCTAGCGACTCTCGCACAGAGATCTACAGCCTACATAGAAAACCCATGTTTTCCCCAAGACTACGAATCTCAAATCCCTGCGAGGGAAATCTTTGGAAGTCTGTGTACGGCTGCAAAGCGCCCAGCTAACTACAATCCAAAGAAGTTGATCAGTTTCAttggaacaggggacccagctCTGTGCAGAGCCGTGGTGCGGTCTATATTTAACTTCTCTTCTTGTGAGGGGAAAAAGGAGTGCTCCTTCAATGGGGCCTATGCTGGGTTCTATTACACAACTGattttttaagattaaatggCTCTTTTTCACTTGAGAAATTCAACTCAACCATGTGGTCATTCTGCTCACAGAAATGGAAACATCTTCAAGCAAAGTATGCCAAAAAGGAGTCATACTTGAGGGGTTACTGTTTCTCTGCAAACTATATCTACAGCCTGTTAGTGGATGGGTATAAGTTCAATTCACAGACCTGGAACAACATCCAATTTAGAAAAGAGGTCAATGAAAACAGTATAGCCTGGTCCCTGGGATATATGCTGACTCTCTCCAACATGGTCCCGGCTGAAGCCAAACTAGTCCGGCTGCCTTTGAGCAGCTCTGTCTTTGCCGGGCTTTTGTTTATGTTCTCAGCTCTGGCTATTCTGAGCCTCATGTTCCTGATCATTTCTGTGGTGAGGTCGTGTTAATACTGGAAGCACGATGTAGCTCCATTGTTTGATTCCAGAGTCTACGAGAGCTGATCATACCAGAGTAGGCTAACAGGCTTGAAGGAATGAGGGAAAGTTTCCTATGGTGGCCTACAGTGGCCAAACCATGCCATAgctcaaacacaaaccaaaactgTAGAAGAAGCTgaagataacattttaaaaacatgatgtaATTGTCCTCAAGGTTTATTTTGCCTGTCCTTTCCACATTATTTCCCCTTTTGCAATACAATTATGTACTTCAAATAGGGGAGGACTTTTTTTGCTGCTTTGTAGATGTTTGCACATGATGTACGCACaaagcatttattaataattgtgtttttatgtttgtttactttcctGTCTTCGTTGTTTTTTCATATTCCGGGATTCTGTCAGTCATAAGCAGATACCGTTTACGAAAAAGGTTTCTACAGTCACAGACATGGTCGAATGACTGCAGACTTGTCCATTTTATAGACTTAGCTCCTTACGGGAACAGGTGGTTGTGTTGGATACGCTCTTGCACGTTGTAAACTTAGTGATTGCtttcagtgaaaaacaaaagcatgacgAAGACATCAGTTATGAATGTGAGATTCTGTTACAGGTtgccttgtgtgtgtttgtcaaataaaatatgttttgtctgCGTGGATTATGTTGCTCAGAGATGCACCATTGGTGAGTACAGCATTCATCAAtacattgtgtaaaaaaaaaaattgtagtaTGTATTCCTAATAAAATCACGGATAAATGATTCATGCAAATAAATTGACTTGTGATTATGGCCTGAATGTGGTGGTACTGAATAAAAGTCTAGGTGTGAAATGTGCTAATTTGCTCACATCAGCGTAGTCCAGCAATgtcaacattttacattcaattcAAAGGCAAACAAGCTCTAGGCTTTGAAttcacaagtttgttttacttttttttttactgtttgttttaatctcttttcTAACCACTATCCAAAAATGGAAGGATTGAGCTCCTTTTAGCTAACTAGTATTCTGCAAAAACCACTTCTTAAAGCAAATCATTCTTGCTACTTCTGTACAATTAGTACCAAAGGCCTGTATTATAAAGTCTAATCTGGCATACCACAGACACAGATCATAAACACAAGTCTTAAAGACAAATAGAGATGTCAAAACAGAAATACTGCCTGTTGTTGCAGGTATTACATTAACTTATTTTTGGAGTCAAGGAGGGGTCTGTTTTTTCTACAGGGAAATTGGCTAACacagtatatagtatagtaatagtataatctgtattgtattaaaGGTATAATAATTGTCTcatgtgaaattaaatgcattttcatcattttaaaatgtcattagcTTTTGGTGGAGACCACATACATACCCCAATATGTTCAGAAGTGAGTAACTAAAAGTATGAAGCAGCAATATGACAGTTCTGCGCAGAGGAAAATTATGTAGTCAGTGTTCTGGTTAATTGTTATCCCtgtaaagaataaatacatttggatgatttaagaaaaaaaaaaaaatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K01510 ENTPD1_3_8, CD39; apyrase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002549 True 2889 mRNA 0.40 9 18528653 18545075

Neighbor

gene id symbol gene type direction distance location
AMCG00002545 rpl14 coding downstream 19983 18504897 ~ 18508670 (-)
AMCG00002544 NA coding downstream 36473 18482733 ~ 18492180 (-)
AMCG00002543 snrk,LOC107101967 coding downstream 101315 18426724 ~ 18427338 (-)
AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding downstream 139012 18383820 ~ 18389641 (-)
AMCG00002542 NA coding downstream 193528 18320139 ~ 18335125 (-)
AMCG00002550 NA coding upstream 9723 18554798 ~ 18572982 (-)
AMCG00002547 grb10,LOC106605415,LOC106579904 coding upstream 41003 18586078 ~ 18602108 (-)
AMCG00002552 NA coding upstream 84574 18629649 ~ 18632830 (-)
AMCG00002548 NA coding upstream 156820 18701895 ~ 18713091 (-)
AMCG00002551 NA coding upstream 178322 18723397 ~ 18759586 (-)
G123926 NA non-coding downstream 59046 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 322521 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 476321 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 713187 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 853543 17660067 ~ 17675110 (-)
G123961 NA non-coding upstream 39634 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 237070 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 738803 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1756997 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 1995232 20540307 ~ 20540523 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 487080 17933464 ~ 18041573 (-)
G123829 NA other downstream 539188 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 822364 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1554352 16958162 ~ 16974301 (-)
G123585 NA other downstream 1688931 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3101980 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3356217 21901292 ~ 21902597 (-)
G124719 NA other upstream 4540919 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4636846 23181921 ~ 23192656 (-)
G124829 NA other upstream 5716490 24261565 ~ 24261823 (-)

Expression


Co-expression Network