AMCG00002550


Basic Information

Item Value
gene id AMCG00002550
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18554798 ~ 18572982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002550
GTTTTGGATGGGTCTTTTTGCTCGTGGTAACCTTGTGTGTTTCAGACGTGCTCTTATGACAGATTGAGCCACGATTCTATTGGCTGTCTGAAGGGGGCACTTGGCATATAAGCAGTTTCTGTTTCCCATGCTCTCGAAAGCTACAACAGAAGCCTGACGGGGACGAGAGTGTCATTGCCATAATTGTGCCCTTTTTGAAAATGGACACGACCGAGTTCAGGAGACGAGGGAAGGAGATGGTGGACTACATTGCGGACTACATGGAGAACATTGAGAAGAGAGACGTGTATCCCAATGTGGAACCTGGCTATCTGAGATCTCTGATTCCGGACGAAGCCCCAGAAGATCCAGAAGCCTATGAGGAAATTGTCAAGGATATTGAGAGGGTCATAATGCCCGGGGCTGCTAGCCCAGCCTGCACAGAGCTGGAAACAGTGATGTTGGATTGGCTGGGCAAGATGTTAAAGCTGCCTGAGGAATTTCTGGCTGGCACTATGGGACAAGGTGGAGGTGTGATACAGggCACCGCCAGTGAAGCCACTTTGGTTGCCCTCTTAGCTGCCCGGTCAAGGACAGTCAAGGCAATTCAAGCTGAGACCCCAGAGCAAGCTGACGCAGATATCATATGCAGACTGGTAGCCTACTCTTCCGATCAGCTCTGTGCCACTCTAGGGACGACACCATCTTGTGCATTTGATCACATCAGTGAACTAGGTCCTATTTGTAATTCGGAGAACATCTGGATGCACATCGATGCGGCATATGCAGGAAGTGCTTTCATTTGCCCTGAATTCAGGCCTCTTCTTAATGGAGTGGAGCACTGGCAAATACCACTAGGCCGAAGATTTCGCTCTCTAAAAATGTGGTTTGTATTCCGGATGTACGGGCTCAAAGGCCTACAGGAGTACATTCGCAAGCACGTGAACCTGGCCAGGGAATTTGAGACTTTAGTTCGCAGTGACCAGCGTTTTGAGATAAGTGCCGATGTGGTGCTGGGATTGGTATGCTTCAGACTGAAgGGACCTAATGACTTGAATGAGAAACTTCTCAAGAGTATAAACGACACGAGGAAGATCCACCTAGTACCCTGTCAGCTGTCGGGCAAGTTCGTGCTGCGCTTTGCCGTGTGTGCGCGCACCACCGACTCCCAGCACATCCAGCTCGCCTGGAAGCGCATCGCCAGCGCCGCCTCCCTCATCCTGCAGCAGTGAGAACAGAGCACGAACACAGAGAGGGGCACCTTCACCGACACTGTTACCTTCCCACGCACCCAAGACAGAAAGACTGcccaattaaatgtgtttgcataTGCAAGAGGTTGTGTCAGCTATTGGACATATTGCCCTTCCTTAGGCAAGGAATGGTTTGGACTCTGGAAGAGGCCATAAAGGGAATAAAAACCTTTAGACTAGTGTATAAAcacattcacatacatatacagacgggtgacaaattaaaggaaaaccaacataaagtgtctcagtaaggttttgggcaccacgagccgccagaacagcttcaatgctcttggcacagattctatgagtctctgaactctactggagggatgagcaccattcttccaaaagatattccctcatttgatattttgatgatggtggtggagagcgctgtctgacacgttggtccaaaatctcccataggtgctgGTGACtggagatctggtgactgcgagtAAAGGTGATCACTCCGAATAACTTTCTAATGATTtacagtgacccttccctctattGCGACAAGTTGTacgaaaatgccccccacagcgtaacagagcctccggaccccctctgtaggggtcaagcagtcaggcctctACCATTcacttggtgtcccacacatgcactcgcccacttgacGAGAATaaggtgaaggatgactcatctgaccatgtcagtttttccacatctctgtagaccagtgcctatggtttgtGCACCACTGAAcactcaaatgtgcatttgtctttgtaatgagacttaattgtatcatgcagtacacctgtttgaaggcatctgcattcgttatgttcctccactcatttattcaggttttcctttaatttgtcactcatctgtatatatatttatagaaagaGATTGAGAGGATGGGACCCTGGATGGGTGGGACCCTGGACCAAAGGTTGTGGGCTTTAAGATCATAAAGTAATATCAATTAGTAATAGTTTCCACCGTCGGCCATCGTGTAGGCTCACTGTCAACATTGATATTTCTATGTGATTTAAAGCTGGATGCCCTTTGCATTCTTATGCAGACGTCTGGCACATGCCACGGTTGTGTAGCCCTGCCTGTTCTAGCTCCTGGTTCACCCTGCATTAATGACAACTGACAGTGCAGAAACACCCAAAAGCCTTACGGTAGCATGTGTGCTCCTCTGTGTGCTTAACCTTAATACCGTTGTTCATCCAAGCTGCTGGAAATCCTCTCCAAAGAATGGTCAAGGAGCTAAAAATATAGCAGGGGATTTTGTGTGAGGGTGATTGAGAGAGATTTGCCCATCTGCAGATGACTGACTTGTTGCCCTtgtttaaactgaaagaaacataTTGAACACAAATCTGATAATGAAACTGCCAGCAGGAGTCTGtatgtcttatttttttgtgagaggagctgtttaattgtttgaattGGGACCACTGCAGTATAGATATCGATGTGTATGTAATCTCCAAGGCTGTGCTTACTAGACAGCATTTCATATCCACTGATTttgactaaattaaaataataaatgtcatgcac

Function

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002550 True 2783 mRNA 0.47 9 18554798 18572982

Neighbor

gene id symbol gene type direction distance location
AMCG00002549 NA coding downstream 9723 18528653 ~ 18545075 (-)
AMCG00002545 rpl14 coding downstream 46128 18504897 ~ 18508670 (-)
AMCG00002544 NA coding downstream 62618 18482733 ~ 18492180 (-)
AMCG00002543 snrk,LOC107101967 coding downstream 127460 18426724 ~ 18427338 (-)
AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding downstream 165157 18383820 ~ 18389641 (-)
AMCG00002547 grb10,LOC106605415,LOC106579904 coding upstream 13096 18586078 ~ 18602108 (-)
AMCG00002552 NA coding upstream 56667 18629649 ~ 18632830 (-)
AMCG00002548 NA coding upstream 128913 18701895 ~ 18713091 (-)
AMCG00002551 NA coding upstream 150415 18723397 ~ 18759586 (-)
AMCG00002557 NA coding upstream 213138 18786120 ~ 18786641 (-)
G123926 NA non-coding downstream 85191 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 348666 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 502466 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 739332 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 879688 17660067 ~ 17675110 (-)
G123961 NA non-coding upstream 11727 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 209163 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 710896 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1729090 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 1967325 20540307 ~ 20540523 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 513225 17933464 ~ 18041573 (-)
G123829 NA other downstream 565333 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 848509 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1580497 16958162 ~ 16974301 (-)
G123585 NA other downstream 1715076 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3074073 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3328310 21901292 ~ 21902597 (-)
G124719 NA other upstream 4513012 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4608939 23181921 ~ 23192656 (-)
G124829 NA other upstream 5688583 24261565 ~ 24261823 (-)

Expression


Co-expression Network