AMCG00002553


Basic Information

Item Value
gene id AMCG00002553
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18799860 ~ 18810379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002553
ATGGACATTACTTCTGTGGAGATGCAAATGAGCTCAGAGATTAATACCTCAATGATGAGAGTGTACGACTACAGTGATTACTATTCAGCTGAACCTGGTACTATTCCCGAGCCCTGCAGTAATCACAATGTCAAGGAATTTGGCTCTTGGTTTCTTCCCACACTTTACAGTTTGATCTTCATTATTGGATTAATTGGAAATGGCCTCGTTGTCTGCGTCCTGATCAAGTACAAAAAGCTTAGGAAGATGACGGATGTGTACCTTCTGAACTTGGCCATATCAGATTTGCTGTTTGTCTTCTCTCTACCCTTCTGGTCTCACTATGCTGCCATGGCTGAGTGGGTCTTTGGAGGATTTTTGTGCAAAGCAATCACTGGATTCTATTTGATGGGCTTCTATGCTGGCGTCTTCTTCATCATGATAATAAGCATAGATCGGTATCTGGCAATAGTGCATGCTATTGCATCTCTGCATCTCAGGTCTGTGACCCATGGATTGCTGGTGAGCCTGGTTGTATGGGCCATCAGTTGCTGTGCCTCTGTTCCTATGATAGTGTTCAGCCAGGTGAAGACTGAACTGGGCAAATTAACTTGCAAAAGTGAGTTTCGTGAAGAGGGGCACACCAAGTGGCATCTGATCATGAAttttgaaattaacattttaggtCTTCTGATTCCTCTGTTTGTTATGACTTTCTGTTATTTGAGCATCTTCTCCATTTTGAGGAGGTGCAGAAatgataaaaaggaaaaagcagtGAGGCTGATCTTCACCGTTGTCATGGCTTTCTTACTGTTTTGGACCCCATACAATGTGGTCATTTTTTTACAGTCTTTGTCAAAAATGGGATATTTTCAAGACTGTGAGTCCAACAATCACCTGAGCCTTGCACTGCACTGGACAGAGACACTGGGTTTTGCTCATTGTTGTTTGAATCCAGTCATCTATGCCTTTGCAGCACAAGATTTCAACAAGCTCGTTAAGAAGCTCATATTTACATGGTGGTCCTATTGTGTTGTGTGCAAACAATGCAAAGCCCCCATGCCTGAAGCTAGAACAGACTctgcatatttcacatttaaaaaatccactGAAGACATCTTATTTGTGACTCTCATGAGTATTGACAGGTACCTTGCCATCGTCCACGCTGTGTTTGCCATGAGAGCAAGGACTCTGTGTTACGGCATGGTGGCAAGCATTGTAACTTGGACAGTGGCTATTTGCGGTTCCATTCCAGAGATCCTCATCACTGGATTGGTTGTTGATGAAGAGAGACTCACCTGCCAAGCTCACTATCCCTCAGGCCAAGAAAAGACATGGAAACTGCTTCATAACTTTGGAGAGAATGTTCTTGGTCTGCTTTTGCCATTGCCCATCCTGATATACTGTTATATAAGCATCCTCATTGTGTTGTTGAAGTCCAAGAACTCCAACAGGCATCGGGCTATAAAGCTGATCTtcatgattgtgtgtgtgtttgtggtgttcTGGTTACCATACAATGTGGTGCTTTTCTTGAAGTCCTTGCTCCATTTTGACATTGGGAATAATTGTGAGAACACGGGGCGACTCGAATTGGCTTTGCACATGACAGAGACGGTTGCTTTAATTCACTGTTGTGTCAACCCTGTCATATACGCTTTTGTTGGAGAAAAATTTAGAAAGCACCTGTACAACGCGTTATCTAGCAATTCTGCTTGTGCGTATTTCTTTAAGCATACAGCAGTTCAGATGAGAGTTTCTGAAAATGAGACCTCAAACACTCCAATATAA

Function

GO: NA

KEGG:

id description
K04179 CCR4, CD194; C-C chemokine receptor type 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002553 True 1776 mRNA 0.43 3 18799860 18810379

Neighbor

gene id symbol gene type direction distance location
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding upstream 341070 18457051 ~ 18458790 (+)
AMCG00002540 LOC106606077 coding upstream 453662 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 638296 18145212 ~ 18161564 (+)
AMCG00002535 LOC107751889,LOC107704104 coding upstream 748944 17998046 ~ 18050916 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 988133 17806735 ~ 17811727 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 556937 19367316 ~ 19385301 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 596679 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 1219779 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 1419348 20229727 ~ 20238940 (+)
AMCG00002574 NA coding downstream 1560164 20370543 ~ 20396006 (+)
G123950 NA non-coding upstream 213833 18584169 ~ 18586027 (+)
G123943 NA non-coding upstream 243298 18554485 ~ 18556562 (+)
G123916 NA non-coding upstream 290086 18504888 ~ 18509774 (+)
G123833 NA non-coding upstream 747522 18051012 ~ 18052338 (+)
G123808 NA non-coding upstream 859227 17926699 ~ 17940633 (+)
G123993 NA non-coding downstream 33989 18844368 ~ 18861644 (+)
G123997 NA non-coding downstream 52299 18862678 ~ 18863965 (+)
G124067 NA non-coding downstream 473499 19283878 ~ 19284277 (+)
G124070 NA non-coding downstream 523420 19333799 ~ 19384234 (+)
G124094 NA non-coding downstream 580744 19391123 ~ 19394724 (+)
G123807 NA other upstream 815130 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1813954 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1839778 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 4438324 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 5670163 13125378 ~ 13129697 (+)
G123989 NA other downstream 21635 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 263314 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 319688 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 1431469 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4177166 22987545 ~ 22990164 (+)

Expression


Co-expression Network