AMCG00002555


Basic Information

Item Value
gene id AMCG00002555
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18871363 ~ 18895560 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002555
GCAGGCAATCAAGACAACAAACATGGCTTTCCCCGGcggtgtgctgctgctgctgctgtcctctgtGCTTGCAATAGGGAACGTAAAACTTGCTTCATCCAGCACTTTTGAAATTGATTACAAGAACGACTGCTTTGCCAAGGATGGAAAGCCATTCCGCTACGTTTCCGGGAGCATCCACTACAGTCGGATCCCCAGAGTGTATTGGGTGGATCGCCTGCAGAAGATGTACATGGCAGGACTGAATGCCATTCAGACCTATGTACCGTGGAACTACCACGAAGCTCTTCCCAAACAATACAACTTCACCGGAGACCGAGATCTCGAGCATTTCCTCCAGCTGGCTCATGACATTGGGTTTCTGGTGATCCTGAGGCCTGGGCCCTACATATGTGCAGAATGGGAAATGGGTGGGTTACCTGCTTGGTTGCTGAAGAAGAATGATATTGTCCTCAGATCTTCTGATGCTGATTACATTAACGCTGTAGACCAGTGGATGGGTACATTACTCCCAAAGATAAAGCCTTTTCTGTATCAAAATGGAGGGCCAATTATTACAGTTCAGgtgGAAAATGAGTATGGGAGCTACTTTGCGTGCGACTACAATTATCTTCGGCATCTTACAAAGCTGTTCCGTTCTCACCTGGGCGATGAAGTTGTTCTTTTCACAACGGATGGTGCCGACCAAGGTTATCTGAAATGTGGAGCTTTGCAAGGCTTGTATGCAACAGTGGATTTCGGGCCAGGTGGCAATGTTACAAAAGCTTTCTCTGCACAGAGGCACGCTGAACCCAGAGGACCTCTGGTCAACTCTGAATTCTACACAGGGTGGCTGGATCACTGGGGGGAACATCACTCCGTGGTTAACAAAGATGCTGTAGCAAAGTCACTGAATGAAATTCTTGCACTTGGAGCCAATGTCAATTTATACATGTTCATTGGAGGAACAAACTTTGGATACTGGAATGGTGCTAACTCTCCGTACGCCCCCCAGCCAACCAGTTACGATTACGATGCTCCTCTGACGGAAGCCGGGGATCTCacagacaaatattttcttattcgGGATGTTATCAGAATGTACAAGAATGTTCCAGATGGACCTCCACCACCAACAACACCTAAATTTGCATATGGTGCTGTAAAAATGAAGATGCTCAAGACTGTTGCTAGTGCCCTAGACATGCTCTCCTTCTCTGGGCCAGTCAAAAGCATTTACCCTCTGACCTTCATCGACATGAAACAGcatttcgGATTCATGCTGTATCGAACTAAGTTGCCTAAAGACTGCAGTAAGCCCACCCCTCTCTCTTCACCGTTAAATGGGGTCCATGACCGAGGCTATGTCACAGTGGATGGGGTTcctcaaggcattctggagagAGACAAGTGCTTAAGTATCAATATAACTGGGGCAGCTGGAAGCGAGGTGGACATCCTTGTGGAGAACATGGGCAGAATAAACTATGGCAAATACATCAATGACTTTAAGGGGCTTGTGTCCAATCTTACCCTTGGTTCTGATACCCTGAGTAACTGGCTGATCTACAGTTTAAGCATTGACGAAGTAGTCAGCAAAGGCTTTTTCTGGAAAGGAAGCCATGGCAGGAATGTGTTTTCTCACTCTGCCAAACTGACTACTCCTGCATTCTACGGCGGCAGCTTCAGCATTCCCAGTGGCATCCCTGATCTCCCTCAAGACACCTACATCCACTTCCCAGACTGGAGAAAGGGACAAGTTTGGATTAACGGATTTAATCTGGGACGGTACTGGCCAGCGCGAGGACCTCAGGTGACCTTGTATGTGCCTGCTCACATCCTGCGCACAGATGCGCCCAATAACATCACTGTGCTGGAATTGGTGAGCGCGCCATGTGATTCCGGCACCTGTACGGTGGAGTTTGTGGATACGCCCATCTTGAATGCCACTGTCTCTCATCCCGCACTGAAGCACAAGATGTTCGACAAGGGAGACTTGGCTTGATTATAATTGAACGCACAAATTCGCATGGataaaaggttaaaaaacacacactgcactaccTCATGATGTGTGCACTCTTCCTCCATGTTTTTTTACTCATTGTACCCTCAATCAGcacaaatgtgaatgtttttttggggggtgggatTTATAAGggtcttttttgtattaatcacagaacattttaaatgattctcagAGAGTTAActtaaaattttaaatgtaatacatatagGGTAGAGGGTCTTTATAAAGGGCATACATGCTTAAATGGGTTTTATGATGCAGAGCAATGGGGatatgtgtgttgtgtatagATAGatgtctatgtatatataacacatatgTATACATCTCGGggacaaattaagagaccactgcaaaattatcagtttctctggttttactatttatag

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004565 beta-galactosidase activity molecular_function

KEGG:

id description
K12309 GLB1, ELNR1; beta-galactosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002555 True 2400 mRNA 0.46 16 18871363 18895560

Neighbor

gene id symbol gene type direction distance location
AMCG00002556 NA coding downstream 84409 18786673 ~ 18786954 (-)
AMCG00002557 NA coding downstream 84722 18786120 ~ 18786641 (-)
AMCG00002551 NA coding downstream 111777 18723397 ~ 18759586 (-)
AMCG00002548 NA coding downstream 158272 18701895 ~ 18713091 (-)
AMCG00002552 NA coding downstream 238533 18629649 ~ 18632830 (-)
AMCG00002554 trioa,LOC108426039,LOC107669652 coding upstream 4713 18900273 ~ 18978957 (-)
AMCG00002560 LOC107551198,LOC107746972,LOC101077175,LOC103367001 coding upstream 237635 19133195 ~ 19160336 (-)
AMCG00002559 LOC101472004,LOC102200234,LOC106926897,LOC103151564 coding upstream 275959 19171519 ~ 19174613 (-)
AMCG00002558 LOC108272792,LOC108435531 coding upstream 353070 19248630 ~ 19258630 (-)
AMCG00002563 papd7,LOC107691498,LOC107694334 coding upstream 438351 19333911 ~ 19351773 (-)
G123981 NA non-coding downstream 88997 18782145 ~ 18782366 (-)
G123961 NA non-coding downstream 285433 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 401756 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 665231 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 819031 18051097 ~ 18052332 (-)
G124068 NA non-coding upstream 388318 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1406512 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 1644747 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 2083537 20979097 ~ 21116735 (-)
G124402 NA non-coding upstream 2899213 21794773 ~ 21794988 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 829790 17933464 ~ 18041573 (-)
G123829 NA other downstream 881898 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 1165074 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1897062 16958162 ~ 16974301 (-)
G123585 NA other downstream 2031641 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 2751495 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3005732 21901292 ~ 21902597 (-)
G124719 NA other upstream 4190434 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4286361 23181921 ~ 23192656 (-)
G124829 NA other upstream 5366005 24261565 ~ 24261823 (-)

Expression


Co-expression Network