AMCG00002558 (LOC108272792,LOC108435531)


Basic Information

Item Value
gene id AMCG00002558
gene name LOC108272792,LOC108435531
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19248630 ~ 19258630 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002558
ATGTGGCAAGAGGCGATGAGAGGCAGACGCTATTTGCTGGATAGGAGTGAGAATGCGACTGCTAAACAGAAGTCTACAGACTGGCTCTACGAGTCCTACTATTGTATGAGCCAGCAGCACCCTCTGATAGTGTTTCTGCTTCTAATTGTGATGGGAGCCTGCCTGGCTCTGCTGGCTGTGTTCTTTGCTTCTGGGCTGGATATTGAAGACCATGTGGCATTTGTAATCACTGTCCCTACGGCTCTTGCAATTTTCCTGACGATCTTCATCCTGGTCTGCATCGAGTCCATCTTCAAGAAGCTGTTGCGCATTTTCTCTTTGGTTATCTGGGGATGTCTGGTTGCCATGGGatatctttttatgttttttggaGGCATCATCTGTCCTTGGGACCAG

Function

NR:

description
PREDICTED: adenylate cyclase type 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002558 True 396 mRNA 0.48 2 19248630 19258630

Neighbor

gene id symbol gene type direction distance location
AMCG00002559 LOC101472004,LOC102200234,LOC106926897,LOC103151564 coding downstream 74017 19171519 ~ 19174613 (-)
AMCG00002560 LOC107551198,LOC107746972,LOC101077175,LOC103367001 coding downstream 88294 19133195 ~ 19160336 (-)
AMCG00002554 trioa,LOC108426039,LOC107669652 coding downstream 269673 18900273 ~ 18978957 (-)
AMCG00002555 NA coding downstream 353070 18871363 ~ 18895560 (-)
AMCG00002556 NA coding downstream 461676 18786673 ~ 18786954 (-)
AMCG00002563 papd7,LOC107691498,LOC107694334 coding upstream 75281 19333911 ~ 19351773 (-)
AMCG00002567 NA coding upstream 103705 19362335 ~ 19366244 (-)
AMCG00002566 ube2ql1,LOC107711339,LOC107691500,LOC107754840 coding upstream 135712 19394342 ~ 19403623 (-)
AMCG00002568 NA coding upstream 223236 19481866 ~ 19493271 (-)
AMCG00002569 NA coding upstream 264222 19522852 ~ 19543805 (-)
G123981 NA non-coding downstream 466264 18782145 ~ 18782366 (-)
G123961 NA non-coding downstream 662700 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 779023 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 1042498 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 1196298 18051097 ~ 18052332 (-)
G124068 NA non-coding upstream 25248 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1043442 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 1281677 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 1720467 20979097 ~ 21116735 (-)
G124402 NA non-coding upstream 2536143 21794773 ~ 21794988 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 1207057 17933464 ~ 18041573 (-)
G123829 NA other downstream 1259165 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 1542341 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 2274329 16958162 ~ 16974301 (-)
G123585 NA other downstream 2408908 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 2388425 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 2642662 21901292 ~ 21902597 (-)
G124719 NA other upstream 3827364 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 3923291 23181921 ~ 23192656 (-)
G124829 NA other upstream 5002935 24261565 ~ 24261823 (-)

Expression


Co-expression Network