AMCG00002564 (med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362)


Basic Information

Item Value
gene id AMCG00002564
gene name med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19407058 ~ 19410399 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002564
TGGTGTTGAGAGAATGGAGTAGAAATGTGTTGATGGTTGCCGTCCTGTTTTGGTTTTCATAATAgccactttttgttttgttttgttgtgttgtgtttagcGGCGTAGGGTTTATGTTTGGACATGGCTGAAAAATTTGATAATCTTGAGGAACATTTGGAGAAATTCGTGGAAAACATCCGACAGCTGGGCATCATCGTCAGTGATTTTCAGCCGAGTAGCCAGACTGGACTTAATCAGAAATTgaaTTTCATGATTACAGGATTACAGGATATTGATAAATGCCGTCAGCAGCTTCACGACATCAATGTGCCACTGGAAGCATTTGAgtACATCGACCAGGGCCGGAATCCACAACTATACACTAAAGAGTGCTTGGAGAGAGCCTTAGCAAAAAATGAGCAAGTAAAGGGAAAGATTGATACCATGAAGAAATTTAAAAGTCTTCTTATCCTGGAACTGGGGAAAGTTTTCCCAGAGGAGATGGTCAAGTATAAAGCAATTCATGGTGACGATCCACCTTCATAATGCTTCTTCAGACATGGAACTGTCATTTGTTGGATGAAATGTCaggtgtaaatatatttaaacttttgttttgttttctacaaagGGGTATTGAATCTTCTTAtggattttcagatttttgtacAAAATTGATCTTTTTGTGttaacaatgaaaatgtaatctccTACTCTGTAACAAGGAAGCTGTGTTAAAAATGTCAACACTATGAAGCAAATCACTGCAGATAAAGGCTATTCTAGTGACCTACTCTGAAAGAGCTAAACCCTTTTGTACCATTttaccactgcacatttttataataaataattttgctaatgctggaaatgtttttctttgaataatgcattattcattttatttggacTTTCACTGGCACTCCATCCCTCAAAAGGCATTGCATCTGTAACATACGTTCTTTAAAAAACATCCTTGGgttcagtttttaatatatagtctGGAGAAGGTAAGATCTATCCAAAGGTGGCAAGAAAGTTGTATTCCTGTAAGAAAGTGAAATATGTTTCTACAGCATAGttctatgaaaaatacattgcatttctTCAGTTGGCTgataagaatgtgttttttgtttttcagtgcatttcaatTCTTGTTTTGCGTTGATTATGCAGTATATTcattggttttgtgtttgtgtgcgaaCATATAGGAGTCCTGTCTGAAGACTGTTATATTGCACAGGCAAGCTATGTGAACAacttgaaataatgaaaattatttatcCATTACCTGTATTCTGG

Function

symbol description
med10 Predicted to enable transcription coregulator activity. Acts upstream of or within atrioventricular canal development and cardiac jelly development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Predicted to be active in chromatin. Orthologous to human MED10 (mediator complex subunit 10).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 10

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15151 MED10, NUT2; mediator of RNA polymerase II transcription subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002564 True 1290 mRNA 0.36 4 19407058 19410399

Neighbor

gene id symbol gene type direction distance location
AMCG00002565 nsun2,LOC107595606 coding upstream 21757 19367316 ~ 19385301 (+)
AMCG00002553 NA coding upstream 596679 18799860 ~ 18810379 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding upstream 948268 18457051 ~ 18458790 (+)
AMCG00002540 LOC106606077 coding upstream 1060860 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 1245494 18145212 ~ 18161564 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 619759 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 819328 20229727 ~ 20238940 (+)
AMCG00002574 NA coding downstream 960144 20370543 ~ 20396006 (+)
AMCG00002575 slc6a3,LOC108272311,LOC107558633,LOC107564665 coding downstream 1001437 20411836 ~ 20426798 (+)
AMCG00002576 NA coding downstream 1047344 20457743 ~ 20463329 (+)
G124094 NA non-coding upstream 12334 19391123 ~ 19394724 (+)
G124070 NA non-coding upstream 22824 19333799 ~ 19384234 (+)
G124067 NA non-coding upstream 122781 19283878 ~ 19284277 (+)
G123997 NA non-coding upstream 543093 18862678 ~ 18863965 (+)
G123993 NA non-coding upstream 545414 18844368 ~ 18861644 (+)
G124150 NA non-coding downstream 751148 20161547 ~ 20161753 (+)
G124165 NA non-coding downstream 830186 20240585 ~ 20240879 (+)
G124178 NA non-coding downstream 948924 20359323 ~ 20359695 (+)
G124232 NA non-coding downstream 1151223 20561622 ~ 20562263 (+)
G124331 NA non-coding downstream 1714616 21125015 ~ 21170354 (+)
AMCG00002561 NA other upstream 273491 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 279111 19073693 ~ 19127947 (+)
G123989 NA other upstream 568527 18832014 ~ 18838531 (+)
G123807 NA other upstream 1422328 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 2421152 16976288 ~ 16985906 (+)
AMCG00002573 NA other downstream 831449 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 3577146 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 3657725 23068124 ~ 23180043 (+)
G124689 NA other downstream 3742249 23152648 ~ 23290535 (+)
G124769 NA other downstream 4267536 23677935 ~ 23681385 (+)

Expression


Co-expression Network