AMCG00002565 (nsun2,LOC107595606)


Basic Information

Item Value
gene id AMCG00002565
gene name nsun2,LOC107595606
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19367316 ~ 19385301 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002565
AGTTGTCTGCGTATCCAACATGGGGAAAAGGAACAGAAACAAGCAGAGAAATCAAGACAAGAATGGAAACCCTGCAGGAAGAAGCAGAGACGATGCTGGTTGGGGTGCTGGGTATACAGAAAtcaacaaggaaaacaaactgtttGAACAGTATTACCAAGAGCTTAAGATTGTTCCCGAGGGAGAATGGGAGCAGTTTATGGAGGCACTGAGGGAACCCTTGCCAGCAACTATAAGAATAACAGGATACAAAAGCCATGCCAAAGAAATCCTCCATTGTTTAAAGGAGAAGTATTTCAAGGAAATACAAGATCTTGAAGTGGACGGCCAGAAATTAGAAGCTCCTCAAGCACTGAGCTGGTACCCCGACGAGCTTGCGTGGCATACAAACATGAGCAGAAAGATTCTGCGCAAGTCCCCTTTGCTGGAAAAGTTTCACCAGTTCCTGGTTAGCGAAACAGAATCTggTAATATTAGTCGTCAAGAGGCTGTCAGCATgattcctcctcttctcctgaAAATTGAACCTCATCATAAGGGGTTTGTCATTGCCAATGATGTGGACAACAAGCGCTGCTACCTGCTGGTTCACCAGGCAAAGAGATTAAACAGCCCTTGCATTATGGTTGTGAATCATGATGCCTCCAGCATTCCCCGACTTCAAATTGAGTGTGGGGGCAAAaaggatattttgttttatgaccGAATTCTTTGTGATGTTCCTTGCAGTGGCGATGGGACGATGAGAAAGAATATTGACGTGTGGAAGAAGTGGTCAACGAGCAACAGCCTTCAGCTTCACGGACTGCAGTTGAGGATCGCAGTCCGCGGTGTGGAGCAGCTGGCTGTTGGAGGAAGGATGGTCTACTCCACTTGCTCCCTGAACCCTGTTGAGGATGAAGCTGTAATTGCATCACTGCTGGAGAAGAGTGAAGGTGCCTTGGAACTTGCAGATGCCTCCAGTGACTTGCCAGGGTTGAAGTGGATGCCAGGGATGACATCCTGGAAGGTAATGACGAGAGCGGGGGAGTGGTACGCAGATTGGTCTGAAGTTCCTCAAAGTCGGCACACACAAATTCGACCAACGATGTTTCCTCCTGCAGACGCAGAGAAATTGAAAGCAATGAATCTAGAGAGATGTATGAGGATATTGCCCCATCACCAGAATACGGGTGGGTTTTTTGTGGCGGTACTTGTGAAGAAAGATCCCATGCCTTGGAATCGCCGGTTTCCCAAGGAATATCATCACAAAACCTTCTCTTTGTTGTCGGGCCCTGTCCTGTGCTCATCCCTGCGCCCCCGTTTTGCATATCCTCACCAGCTCCGTGGCAAAGCAGCAGAAGCGGTCGGTGCAGCCGAGGAGATTCCTGCCGAAACTGCTGATGAAGGAGGAGAGGCGGCTGCAGAGGACAAACCCAAAGACCTTGAGGACTCCCAGGAGAGCTCTGTCAAAAAAGATGGAGTGTGTGGTCCTCCACCATCAAAAAAGATGAAGCTGTTTGGCTTCAAAGAAGATccctttgtgtttctgtctgagGATGATCCCGTGTTCTCCCCAATCCAGAAATTCTACAACCTTTCCCCAACCTTCCCGAAGTTCAATGTACTGACCAGGACCCATGAGGGTAAGAAGAGACATCTGTACATGGTCTCCAAAGAGCTCCGAAATGTCCTGCTCAACAACAGTGAACGCATGAAGGTTATTAACACAGGAGTGAAAGTTTGGTCTCGCAATAATGACGGAGAACAGTTTGGCTGTGCCTTCAGGCTAGCCCAGGAGGGCATTTATACACTCTTTCCTTACATTAATGCCAGAATCATTAACATTTCTGTTGAAGATATCAAGGTACTGTTAACGCAAGAGAATCCCTTCCTTAGCAAACTGGAAAATGAAGCGCACGAACAAGCCAAGAAGTTGTCAATGGGCAGCCTTGTTCTAAGATACCAACCCGACACAcaGAACGCAGCATCTCCGCAGTGTCCCATTGAACTGTGTGGCTGGAGAGGGAAAACCTCTATTCGCGCTTTTGTCCCCAAGAACGAGCGCTTTCACTATCTGAGGATGCTGGGGGTGGAGGTGTTCCGGGAGAAGATCCGAGGGGGCCCCGTGGATGGGAAAACTGCAGGGGAGCCGGAGATTGGGGAGCCGGGTGAGATGCCCACCGTCGAGGACTCTGGAGAGGTGGAGTGCGAGGGGGACAAGGGGGCGGAAGCGAAGCCCGAAGCACCGGAGCTGGATGGGGAGGAGGTTATGGAAGCGGAAGACTCTCCTGCTGAATGTACtgcagaaaacaatgaaaaagtgGTCACTCCTGAAACTGTAGGCCTGCAGCAGTCTCTTTTACGATATGAAACTCTCCCATTCTTTTATATCGAGACTAGGAGCTAC

Function

symbol description
nsun2 Predicted to enable tRNA (cytosine-5-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human NSUN2 (NOP2/Sun RNA methyltransferase 2).

NR:

description
PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity molecular_function

KEGG:

id description
K15335 NSUN2, TRM4; tRNA (cytosine34-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002565 True 2389 mRNA 0.49 19 19367316 19385301

Neighbor

gene id symbol gene type direction distance location
AMCG00002553 NA coding upstream 556937 18799860 ~ 18810379 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding upstream 908526 18457051 ~ 18458790 (+)
AMCG00002540 LOC106606077 coding upstream 1021118 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 1205752 18145212 ~ 18161564 (+)
AMCG00002535 LOC107751889,LOC107704104 coding upstream 1316400 17998046 ~ 18050916 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 21757 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 644857 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 844426 20229727 ~ 20238940 (+)
AMCG00002574 NA coding downstream 985242 20370543 ~ 20396006 (+)
AMCG00002575 slc6a3,LOC108272311,LOC107558633,LOC107564665 coding downstream 1026535 20411836 ~ 20426798 (+)
G124067 NA non-coding upstream 83039 19283878 ~ 19284277 (+)
G123997 NA non-coding upstream 503351 18862678 ~ 18863965 (+)
G123993 NA non-coding upstream 505672 18844368 ~ 18861644 (+)
G123950 NA non-coding upstream 781289 18584169 ~ 18586027 (+)
G123943 NA non-coding upstream 810754 18554485 ~ 18556562 (+)
G124094 NA non-coding downstream 5822 19391123 ~ 19394724 (+)
G124150 NA non-coding downstream 776246 20161547 ~ 20161753 (+)
G124165 NA non-coding downstream 855284 20240585 ~ 20240879 (+)
G124178 NA non-coding downstream 974022 20359323 ~ 20359695 (+)
G124232 NA non-coding downstream 1176321 20561622 ~ 20562263 (+)
AMCG00002561 NA other upstream 233749 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 239369 19073693 ~ 19127947 (+)
G123989 NA other upstream 528785 18832014 ~ 18838531 (+)
G123807 NA other upstream 1382586 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 2381410 16976288 ~ 16985906 (+)
AMCG00002573 NA other downstream 856547 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 3602244 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 3682823 23068124 ~ 23180043 (+)
G124689 NA other downstream 3767347 23152648 ~ 23290535 (+)
G124769 NA other downstream 4292634 23677935 ~ 23681385 (+)

Expression


Co-expression Network