AMCG00002567


Basic Information

Item Value
gene id AMCG00002567
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19362335 ~ 19366244 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002567
ATGACGAATATATTGTTCTACCTCTTTGGCTCCGAGACAAACGAGCAAAGCATCCTAGAGAACATGTCTTATGTGATGCTCTTGATGGGGGGTGTAACgtttttaattttactcttTGAAAACGTGCCCTATGGCAGGTATGCTTCAAAGAGGTACGGCTTCCCGGTTAATGTCAAATTCGCCTGGTTTGTGCAAGAGATGCCTGCCTTGGTCGTTCCGCTCTTGCTATTATTGACTACCTCTGCTGCAAGAGCCTCTTATTTACCCAACCGGCTGCTCATCGCAATGTATCTGTGCCACTACCTTCAAAGgtcGCTGATTTACCCCTTCTTAATACGAGGAGGAAAACCGaccccctttctttcttttgcaagtgcatttgttttctgtgtgttcaATGGATATCTACAAGTAAGATACTTGAGCCACTTTGCAATGTACCCTGCAGAATGGATAACACAGCCATGCTTTATCCTAGGATTCATAATGTGGTTAATGGGGATGCTGATAAATATACACTCGGATCATATTCTTAGAAATCTCAGAAAACCTGGAGAAACGGACTACAAAATACCAAAGGGTGGCTTGTTTAGATATGTATCTGGTGCAAATTTTCTTGGCGAGATTATGGAGTGGGCTGGGTTTGCTGTGGCCTCTTGGTCAATTCAGAGTGCTTCCTTTGCCATTTTTACCTTGGTGGTGCTCTCCAGTCGGGCTGTTTCCCATCAT

Function

GO:

id name namespace
GO:0008202 steroid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function

KEGG:

id description
K12343 SRD5A1; 3-oxo-5-alpha-steroid 4-dehydrogenase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002567 True 729 mRNA 0.44 4 19362335 19366244

Neighbor

gene id symbol gene type direction distance location
AMCG00002563 papd7,LOC107691498,LOC107694334 coding downstream 10562 19333911 ~ 19351773 (-)
AMCG00002558 LOC108272792,LOC108435531 coding downstream 103705 19248630 ~ 19258630 (-)
AMCG00002559 LOC101472004,LOC102200234,LOC106926897,LOC103151564 coding downstream 187722 19171519 ~ 19174613 (-)
AMCG00002560 LOC107551198,LOC107746972,LOC101077175,LOC103367001 coding downstream 201999 19133195 ~ 19160336 (-)
AMCG00002554 trioa,LOC108426039,LOC107669652 coding downstream 383378 18900273 ~ 18978957 (-)
AMCG00002566 ube2ql1,LOC107711339,LOC107691500,LOC107754840 coding upstream 28098 19394342 ~ 19403623 (-)
AMCG00002568 NA coding upstream 115622 19481866 ~ 19493271 (-)
AMCG00002569 NA coding upstream 156608 19522852 ~ 19543805 (-)
AMCG00002570 LOC103388314,LOC102783449,LOC100707272,LOC101473954,LOC103366223 coding upstream 472140 19838384 ~ 19843617 (-)
AMCG00002579 NA coding upstream 903316 20269560 ~ 20274450 (-)
G124068 NA non-coding downstream 78042 19283878 ~ 19284293 (-)
G123981 NA non-coding downstream 579969 18782145 ~ 18782366 (-)
G123961 NA non-coding downstream 776405 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 892728 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 1156203 18205668 ~ 18206132 (-)
G124175 NA non-coding upstream 935828 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 1174063 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 1612853 20979097 ~ 21116735 (-)
G124402 NA non-coding upstream 2428529 21794773 ~ 21794988 (-)
G124429 NA non-coding upstream 2552456 21918700 ~ 21918915 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 1320762 17933464 ~ 18041573 (-)
G123829 NA other downstream 1372870 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 1656046 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 2388034 16958162 ~ 16974301 (-)
G123585 NA other downstream 2522613 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 2280811 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 2535048 21901292 ~ 21902597 (-)
G124719 NA other upstream 3719750 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 3815677 23181921 ~ 23192656 (-)
G124829 NA other upstream 4895321 24261565 ~ 24261823 (-)

Expression


Co-expression Network