AMCG00002573


Basic Information

Item Value
gene id AMCG00002573
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20241848 ~ 20333030 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002573
atggatACTAATCCGAGACCACGATGTAATATGCTAATTGAAGAGATTGTACTTGACGTCTGTTTCCCTGGGTTAGAGTGGGAGAACATTGTAGAGATCGGCACAATAAAAGTGCGGTTCTCTAAAGAGAAGGAGACGCATCTGCTTGGGCTTGAGATgctGTACGCCACAAATGATAGAGTCAGAAggctgaaaatgaaaagcatcaaTCTGGATGTCGTGCAAGgtCCTGATGCGATGGCACCCCTTTTGCTGCAGCACCTCGCCAGTTCGTTCACCAGGCAGATGGCACACCTGAGCAGATACAAGGCCAGCCCTTCCTCATTCTGTGCAAGGATAGCTCAGGGCTCAGTCCCAGAGCTGCGGAGTGAAACGCACGAGGACCAGCTGAAAGAACAAACCTCACCCCTGTGTAAAACCCTGGATCCTCGGACCGCTGGGAATGAGCTCAAAAATAAGGTCCGGAAGAAGCATCTCAGTCCCCTTTGCCACACAGCCAGCGACAAAGACCAGTACAGAAAGTga
>TU155679
CTGATTTCGCAGAACATAGTTAAAACACATATACAGcgtatttgaaaacaaactttcGGATATTATATTCGTTATTTATACTAACGTTATCACAACAGAGAAGTCATccaatctgttttttttgtttttttttgtggtgttgCTGTTCGTTTGGCATTACCTGTCCCGTGTGAGTTATTTTCTCCCCGGTAGTGGATACATTAGCACTGTATCGACAGGCAGGGACGACCGAGACCCTAAGTGGAGCCAAACTATATCTGgcgtttttaatgtttatgaaGGACAAGAGCCTCTGCATGGAAGCCGCCATGTTTGCCCACTCTCCTCACCCAGAAGCCTTTGCGCACCTTGGCCCTTTTTTTAAGACAGCAGGGTTTCTGGGTCCTAGTGCTAGGAGATTACAACCTCGAAAATACataaactgtttgtttgttcaagTGAAGAActcacatcaataaataaatacattgataattgaaaaattaattagATAACATAAACTATGCCGTATAGTACAGCTTCAGTCAAGGCCAAACTGAACTGCAGTTGGAAACGGGCGGGTTCGAGGACCCGGCGGAAGTCTGCGTTGTGACTTTCCCCGGGCTCAAAGTCAGGCAGGTGACACGCTGCTCTCCAGGCCGAGTCTGCAAGGggacaatattattaatatcagcTGATCAGGATTGCTGCTTAAAgtCCTGATGCGATGGCACCCCTTTTGCTGCAGCACCTCGCCAGTTCGTTCACCAGGCAGATGGCACACCTGAGCAGATACAAGGCCAGCCCTTCCTCATTCTGTGCAAGGATGTATGGATGTCTTTCTAGGGTGGCCGTTCTGCCGCCAAAAATATCGCCATCTGCTTTCAGCATGTATAGGCTGCCCAGTATGCCTCTCCTTGGGCAGTGCCAGCTCCCGTGTTCGCAGCAGTTAGCGGGGATGAAGACAAAGACTGCATTAAAAAGACGCTGTCAGGACTGTTTCTTTGTGCGCAGAAGGGgaagattgtttgttttctgcaagaCGAATCCCCGACACAAGCAACGGCAAGCATGAAGGGAGAAACGAGGAGATTATGGATATGAAATGTTTGTAATCATGTATGCTTTGTTTGCAGTGAGATGCTTTGCAAATGTCactatttacaataattaaaaacaaatcaaacacttAATGTTTTGTTCCTATAAGCtgtatgtgttgtgttattGGTGTCCTTcctttttcagttaattaaatccTTTAAGGGTTCAGTCCATCCCACTCCAGTTTACTCTATAAGCTACATTTTGAATGATATACCATATTGAATGAATCATAATGCATTTGATTCATATCCCTTCCTTTTCATGTTGGCCACTATAACACTTGTACCTTATATTAATcagaaatgtttgtgtgtgtgtgtgctatatATTATTTCAGGGGTATAGGATGGTCGAACAGTATTTAAAGACCTTGTGCATTTTACAATTCCTcaccatttcaaaataaactaatcCAAAATCAATTTTA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002573 False 525 mRNA 0.50 8 20241848 20333030
TU155679 True 1513 TUCP 0.42 2 20274089 20276255

Neighbor

gene id symbol gene type direction distance location
AMCG00002572 LOC106593690 coding upstream 2908 20229727 ~ 20238940 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding upstream 207988 20030158 ~ 20033860 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding upstream 831449 19407058 ~ 19410399 (+)
AMCG00002565 nsun2,LOC107595606 coding upstream 856547 19367316 ~ 19385301 (+)
AMCG00002553 NA coding upstream 1431469 18799860 ~ 18810379 (+)
AMCG00002574 NA coding downstream 37513 20370543 ~ 20396006 (+)
AMCG00002575 slc6a3,LOC108272311,LOC107558633,LOC107564665 coding downstream 78806 20411836 ~ 20426798 (+)
AMCG00002576 NA coding downstream 124713 20457743 ~ 20463329 (+)
AMCG00002577 NA coding downstream 354320 20687350 ~ 20868956 (+)
AMCG00002581 NA coding downstream 688906 21021936 ~ 21054156 (+)
G124165 NA non-coding upstream 969 20240585 ~ 20240879 (+)
G124150 NA non-coding upstream 80095 20161547 ~ 20161753 (+)
G124094 NA non-coding upstream 847124 19391123 ~ 19394724 (+)
G124070 NA non-coding upstream 857614 19333799 ~ 19384234 (+)
G124067 NA non-coding upstream 957571 19283878 ~ 19284277 (+)
G124178 NA non-coding downstream 26293 20359323 ~ 20359695 (+)
G124232 NA non-coding downstream 228592 20561622 ~ 20562263 (+)
G124331 NA non-coding downstream 791985 21125015 ~ 21170354 (+)
G124364 NA non-coding downstream 1320752 21653782 ~ 21654725 (+)
G124403 NA non-coding downstream 1461964 21794994 ~ 21795202 (+)
AMCG00002561 NA other upstream 1108281 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 1113901 19073693 ~ 19127947 (+)
G123989 NA other upstream 1403317 18832014 ~ 18838531 (+)
G123807 NA other upstream 2257118 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 3255942 16976288 ~ 16985906 (+)
AMCG00002622 NA other downstream 2654515 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 2735094 23068124 ~ 23180043 (+)
G124689 NA other downstream 2819618 23152648 ~ 23290535 (+)
G124769 NA other downstream 3344905 23677935 ~ 23681385 (+)
G124863 NA other downstream 4089222 24422252 ~ 24422613 (+)

Expression


Co-expression Network