AMCG00002575 (slc6a3,LOC108272311,LOC107558633,LOC107564665)


Basic Information

Item Value
gene id AMCG00002575
gene name slc6a3,LOC108272311,LOC107558633,LOC107564665
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20411836 ~ 20426798 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002575
AGCATTTCTGGTCCCTTACCTCTTTTTCATGGTAATTGCCGGAATGCCCCTCTTCTATATGGAACTGGCATTGGGACAGTACAACAGGGTGGGAGCAGCTGGTGTCTGGAAAATTTGCCCCATATTCAAAGGAGAGGCGTTCTGCATCAAAGTGAGGGAATTAATGACTTGGGCTTACCCAGATGGCAGCTCACACTGTGTCTCGTTGTGGTTATTGTGATTCTCTACTTCAGCCTATGGAAAGGAGTAAAGACCTCGGGAAAGTTTTCCCTTTCAAGAAGCCCCAAGCCTCTGCCAAAAGATGCTATCATTACCAGCTCTATCAACTCCTTGACAAGCTTTTTCTCCGGATTTGTCATCTTCTCTTTCCTCGGCTACATGTCACAGAAACACAATGTGGCCCTAGATGAGGTAGCGACTGATGGGCCAGGGCTCGTGTTTATAATATATCCAGAAGCTATTGCAACATTGCCGGGGTCTTCTGTGTGGGCGGTGATCTTCTTCATTATGTTGCTGACCTTAGGTATTGACAGTGCtATGGGAGGGATGGAGTCAGTAATCACTGGGCTGATGGACGAGTTCAAGTTTTTGCACAAACACCGTGAACTCTTCACACTTTTTATCGTTGTTTCGACCTTCCTCATATCTCTCTTCTGCGTCACAAATGgtggtatttatgtatttacactCCTGGACCACTTTGCTGCAGGAACATCAATTCTGTTTGGAGTGCTTATTGAGGCTATTGGCATCGCCTGGTTCTACGgaGTTGATCGATTTAGTGATGATATTAAAGAAATGATTGGACACAGGCCTGGCTTGTACTGGAGACTCTGCTGGAAGTTTGTGAGTCCCTGTTTCCTCTTGTTTATGGTGGTTGTCAGCTTTGCAACATTTAACCCTCCTCACTATGGGACATATGAGTTTCCAGTCTGGGCTAACGTCATTGGCTGGTGTGTTGCCATGTCCTCTATGGCAATGGTACCTATATACGCCATCTACAAATTCTGCATCCTACCAGGGACATTTCGGGATAAATTAGCTTATGCAATCACCCCTGAGACCGAGCATCACCTCGTGGAAAACGGAGAAGTTCGACAGTTCACGcTTCATCACTGGCTGATGGTC

Function

symbol description
slc6a3 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including dopaminergic neurons; forebrain; male organism; medulla oblongata; and retina. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; nicotine dependence; and obesity. Orthologous to human SLC6A3 (solute carrier family 6 member 3).

NR:

description
PREDICTED: sodium-dependent dopamine transporter-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05036 SLC6A3, DAT; solute carrier family 6 (neurotransmitter transporter, dopamine) member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002575 True 1128 mRNA 0.46 11 20411836 20426798

Neighbor

gene id symbol gene type direction distance location
AMCG00002574 NA coding upstream 15830 20370543 ~ 20396006 (+)
AMCG00002572 LOC106593690 coding upstream 172896 20229727 ~ 20238940 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding upstream 377976 20030158 ~ 20033860 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding upstream 1001437 19407058 ~ 19410399 (+)
AMCG00002565 nsun2,LOC107595606 coding upstream 1026535 19367316 ~ 19385301 (+)
AMCG00002576 NA coding downstream 30945 20457743 ~ 20463329 (+)
AMCG00002577 NA coding downstream 260552 20687350 ~ 20868956 (+)
AMCG00002581 NA coding downstream 595138 21021936 ~ 21054156 (+)
AMCG00002582 NA coding downstream 627708 21054506 ~ 21070496 (+)
AMCG00002587 NA coding downstream 1248273 21675071 ~ 21693525 (+)
G124178 NA non-coding upstream 52141 20359323 ~ 20359695 (+)
G124165 NA non-coding upstream 170957 20240585 ~ 20240879 (+)
G124150 NA non-coding upstream 250083 20161547 ~ 20161753 (+)
G124094 NA non-coding upstream 1017112 19391123 ~ 19394724 (+)
G124070 NA non-coding upstream 1027602 19333799 ~ 19384234 (+)
G124232 NA non-coding downstream 134824 20561622 ~ 20562263 (+)
G124331 NA non-coding downstream 698217 21125015 ~ 21170354 (+)
G124364 NA non-coding downstream 1226984 21653782 ~ 21654725 (+)
G124403 NA non-coding downstream 1368196 21794994 ~ 21795202 (+)
G124405 NA non-coding downstream 1368517 21795315 ~ 21795957 (+)
AMCG00002573 NA other upstream 78806 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 1278269 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 1283889 19073693 ~ 19127947 (+)
G123989 NA other upstream 1573305 18832014 ~ 18838531 (+)
G123807 NA other upstream 2427106 17915436 ~ 17984730 (+)
AMCG00002622 NA other downstream 2560747 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 2641326 23068124 ~ 23180043 (+)
G124689 NA other downstream 2725850 23152648 ~ 23290535 (+)
G124769 NA other downstream 3251137 23677935 ~ 23681385 (+)
G124863 NA other downstream 3995454 24422252 ~ 24422613 (+)

Expression


Co-expression Network