AMCG00002577


Basic Information

Item Value
gene id AMCG00002577
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20687350 ~ 20868956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002577
ATGTGCCCTGGCTTCAGCAGGACTGACACCATCTGTATGCTGAAATATGGCTTACGACAGAaaagggagggggtggggggggacaagGAGAGCGGCATCCAGCACCCAGAGCTACAGATCTCATCTCATCCTGGGCGTCGATGTAAAGCACATCATTCTTCTCCCTGTGGATCTCGCTCCTCCACCAGTAAAAGCCTATTGAAGTCTGGCGCTGTGTGTGGAACCTGCACTCCTCGCAGACTggcagagacacagggacagagcaGGGTCCGGCTGGGGCACGGACAAAGAGGCGGATTCGTATCGGAGTGCCAAGGGAACTTTAAAAGTACACAGAATAGACGATGTGCTGATTACCTTGCCCAGATCGTGCCACCTTCTGTGGAAGAATCAGACACCCATGCCTTGGCCTCTGACAGCGCTGGTGAGcatgaTGTGAACCAGATGGACTCTTCAGGGCTTAGCATCAAACAGAGCTGCCTATGGCTTAGTGAAGAGGCAGACTACCCAACAGAGAGCAGCACCAGCTGTGAGGTGAAGACAGTGGATGTTGAGGGACAAACTAAATTAGATGACAACAGGGATGCATCAGATATCCGAGAATACAACAACCCTGTCTCAGATATCTACACAAGTCTGTACAGCATCAGGATTTTTGTTACCATGCGAGACATATCCAACCAGCTTCAAGCTCCCGATGCCTaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002577 True 705 mRNA 0.52 11 20687350 20868956

Neighbor

gene id symbol gene type direction distance location
AMCG00002576 NA coding upstream 224021 20457743 ~ 20463329 (+)
AMCG00002575 slc6a3,LOC108272311,LOC107558633,LOC107564665 coding upstream 260552 20411836 ~ 20426798 (+)
AMCG00002574 NA coding upstream 291344 20370543 ~ 20396006 (+)
AMCG00002572 LOC106593690 coding upstream 448410 20229727 ~ 20238940 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding upstream 653490 20030158 ~ 20033860 (+)
AMCG00002581 NA coding downstream 152980 21021936 ~ 21054156 (+)
AMCG00002582 NA coding downstream 185550 21054506 ~ 21070496 (+)
AMCG00002587 NA coding downstream 806115 21675071 ~ 21693525 (+)
AMCG00002588 NA coding downstream 830730 21699686 ~ 21742911 (+)
AMCG00002590 ndufb9 coding downstream 943622 21812578 ~ 21815488 (+)
G124232 NA non-coding upstream 125087 20561622 ~ 20562263 (+)
G124178 NA non-coding upstream 327655 20359323 ~ 20359695 (+)
G124165 NA non-coding upstream 446471 20240585 ~ 20240879 (+)
G124150 NA non-coding upstream 525597 20161547 ~ 20161753 (+)
G124094 NA non-coding upstream 1292626 19391123 ~ 19394724 (+)
G124331 NA non-coding downstream 256059 21125015 ~ 21170354 (+)
G124364 NA non-coding downstream 784826 21653782 ~ 21654725 (+)
G124403 NA non-coding downstream 926038 21794994 ~ 21795202 (+)
G124405 NA non-coding downstream 926359 21795315 ~ 21795957 (+)
G124408 tatdn1 non-coding downstream 936664 21805620 ~ 21810821 (+)
AMCG00002573 NA other upstream 354320 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 1553783 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 1559403 19073693 ~ 19127947 (+)
G123989 NA other upstream 1848819 18832014 ~ 18838531 (+)
G123807 NA other upstream 2702620 17915436 ~ 17984730 (+)
AMCG00002622 NA other downstream 2118589 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 2199168 23068124 ~ 23180043 (+)
G124689 NA other downstream 2283692 23152648 ~ 23290535 (+)
G124769 NA other downstream 2808979 23677935 ~ 23681385 (+)
G124863 NA other downstream 3553296 24422252 ~ 24422613 (+)

Expression


Co-expression Network