AMCG00002578


Basic Information

Item Value
gene id AMCG00002578
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20505594 ~ 20512929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002578
ATTGTATTGAAACACATCTATAATACGTATTGGATTCATAGGCTTGCGTTTGCAAGACATAGCAaagatttgtattcatttccTTTGATATAACTCCACATTTTTACAAGCTTCTGTCGAATTGCATGGTACTTCTTTTAGAAATGaccttttttttataatcagtAAGCAAAGGTTTGGCGTCACCGACTACCTTCCATAAGTAGTAAAGGGATTTCAGGACCCTGGAGAGCGTCCTATTTAGAAACCATACATCGCCCGCCTGTTTATGTACAAAAGTCTGGTTTTGAAAGCTGCAAATGCTACTGGAAGCTGGTTTCAACACTATACTGAAAATGACCTTGGGATATACATTTCCTTAACGGCACAGATATGTTGTGTAGCTGTCTCAACCTACAGTTTCCTCCGTAGCGTACAAGCTCCCGGTTTAGTTCATACAGGTGCCCGAGAACCGGTGCATTTCCGATGGCTTGTATTTTCTGGAAGACATTGAATAATGTGCATTACAAACAGCATTGCACGTGTTCCTGTgttgattggtttatttattcacGATTTATTTACTATATCCTCAAACATATGGTACGTGTTCCCATGTCTCCTCACTATATCTGATGTAGGCGCGTTGCATTTGTTATCATTGTAAATTAGAATGCGTAAGCTGCATAATAAGGCAttggattaaaaatatataaatatgtctcTTGAACACATGATCTTAGGGTGTCGATTCACTTGTGTTTACACTTGTCGGCTATTACACTGGTATCCGGCTTTAAACATgcgcatttgttttgtttctggtgAAACTGGGCTCTATCTGGAAGGAAAATCATTACAATCCTTGGGGTAAGCATACGTCACTTACTTGTTACATCTGTGCCTTTCCTTCTGTAGACATGATTTGATTACTAGTAGTGGTTTTGCAGACCTAGTGGAGCGTGTCATTGTATAATAGCTTTTCAAATATGTTGTACTCCATTTCAGGGTCATAGAGAAGGTAAGTtggaaattatgtatatacacatatacataagttggaaattatgtatatacacatataaaaacataactaaTTTGTGTGATTGTTTGTGAGACCTAACAAGGGCTGAGAAAGGAGAAGTAAACCACTACAAATGCTAAGTGCATTCAGGCTGATTCAATAGcagtcatttttacatttttaagtgttGTGGGTATACAGAATGACCTACCAAGCCATTTTGCAGAAATTGTTCACTTACATCCATCAAGAAATGTCTGGATGTGGTTCTTGAAACGGCTACCACTATACTACAAGAAACATAGGCCTTCCTCTTATTAGTCTCCCTTTTTCTTGCTTCTTTGTTGttcttcattttatatatatatgttataatcatcatcagtcTTTATCAATCCATtgctagatgaaggcctccccaagatatttccacttgtttctatgtacagtgtgtttttttctatttcacggcagcaaatcttatttcattcatattaacatttcaGGAGTAGACAACTCCAATTCAGCTCTCTCACTTTAACCCGATACAATTCTCCTTCCTAATCACACACCCCTAGCATTAGTCATTTTCCACAGTTCCACCGCTATGCCCCCTAACCTGCAAGTATCTCGCCAACCAGCTTACTTGAGCTAGACTTACACCCTCCTTCTCTCATTGACACATCCTTTGATTCCAGTGATGAACTGTTCCAGGAACTTAGTTCCTCATCTTTAAGCCGAGCTGCGTCTCCTTCACTCAAATCCATCATTGTCGCTCTTAGCCCTTTCACGAAGAGTCATCCTGGATCCTGTTCCTACTCCTCACAACACCTGCACCCTTGTCCAGCTCCTGACTCCCTCCCTTTACCCGCTGCTCAACCAGGGAGACCCCTCGTAGGACCTGCAAACCACACCATTTCAGCAGCAACAGTCAGACGCTGGCACAGGTTCTGCCCCAAATGCTCCTGCAAATACACTCCTCAGCGAAGGTCAAACCTCTGATTGCTCAATGGGCCACTACTTCTACCTTCCAGACCTTCTCCCTGTCCTCACATCCTCCACTCCGGGTCCACCTAATGACCAAACTCCTCCACCTGTAGTCCCTTTCTCCTGAACGAAAACCCGCAAAAGATAGTTGGCTTCTAACCAGTTGGATCCAACCATAATGGACTAGACCATTGCCCACCTGCATCAGGTTTCAAACGCCACTGCATTAAGTGAATACAGGTCACATCCCTTGCAACTCAATGAGGAATCCCAGATCACATGATCACATCACTTGACCGCCAGACCTCGGAAGCTTACTGAACATAAATTAGATCAGACATCAAACAAGACCATGCACATACATTCTGCATTGCCAGTATGGGAGTTTGCTTTACTCTTTTGGAACTTTAATTGTCTGGACTGAATTTAAACTAATGATAACATTTTGGGAGTGGAAAACTCTGATTCAGCTCTCTCACTTCTGccaaataaagtataaatacccCATCCTAATCTCACACCCCTAGCATTCTCCGTTTTGCATCCCACCACCTCTCCCGTCACTGCCTCTGCGGCAGCTCCTTGGCATATTCCCCCAGAAACaaagagtgggggggtgggggaagggtTGATGGTTTGGACCCAGCGCCAGACCATCATTCCCTCAGTCAGGTGAGTAAAGCCGTGTTGTAAACCACCTTggaaaaagaaaggagagaacTACACAAGGATAAATATTAACTTGTAAAGAGATTGATTCACATTGGTAAGACTTATCTAGAAAAGTCTGATCATTATATAGTCTAATAGTCTAGTTATTATATATAACTAACATAGTCCGTCTTAGTTAGCCAGGGTTGATTATTCAAGGATATGGATCAAATTATATTACTGGGCAGATGGCAAGGGGAGACTATTCCATTAacccctctatctctctctctatctctttctgtgtctctctctctggagaaCTGAGTTGTGTTTCATTCCATGTGTGTTCCAGATGTGAAGGATGAGTTCTTGCTCAGAGATCTGTGGGTCAGAGAATGCTGAGCAAGCCCAGAGTGCGGCAGAGAGCCAGTTCCAGCACTATGGAGTTCGCTCCTATTTGCACCAGTTCTACGAAGACTGCACAGCCTCTATCTGGGAGCGTGATGAAGATTTTCAGATTCAGAGATCCCCGAACAGGTGGAGCTCTGTTCTCTGGAAGgtcGGACTCATGTTTGGAACCCTATTTCTGGTCATTGGCCTGATAGTCATCACCGTTGGTTACACCGTTCCGCCGAGAATCGAAGCCTTTGGGGAAGATGAGTTGCTGTTTGTGGATAGCCACGCGGTACACTTTAACCGCGCTTTGGAGATCTGCAAGCTCGCCGGTGCCATCCTGTTTTGCATTGGGGGAACCATGATGGCAGTCTGCCTCCTAATGTCGGCATTTGCCAAGAGCTATTCCAAGGAAGAAAAGTACCTGCAACAGAAATTCAAGGAGAGAATAGCCAAATTGCAGGCTTCCGTGCACCCCATTACGAAAGCCCCTACTCCCGGAGAAAGTAAGATCCCTGTCACTCTGTCCAAGGTGCAAAATGTTCAGCCTACATCTGAAACCTGATGGTAAATGTTGGTGAAATTATATGTGAATCCATTTCCTTCAAGGTCAGCTCATATGATTAGtcagaaatggaaacaaaaaatacataaaaatggaaatacatgagaatataattaaaacccACTAAATAACTTTACACTAATGCCCTCCAGTGGatcattattcttttttttttttatccttctTTATGTTAAATTTCAATGGATCAGTTCCAGCATAATAAATGTGTTCTTGTTGTGGGATACAAGCAATTACTTGCAGTTCTGTGTTTAGGGCATTTTTTCACCTAACAGTTTGGAGGACAGGGAATTCACGCAGGGGGCTGTTTTTCTTCTATGAAATTCCTGCTTGAACACATGGCAGAGTAACCAGATTAACACTGATGAACAGACATCTATGTCTAAATTATGCCACAACACTGGATGGGAAAAGAATCTCACTGGTCTAATGGCTATAATAGCATATCTAAGCATcctataattaatttaaaaaaagcagaacagCTGAGAAGCGTATTGCCTGATAAAACTAGTTGACTcacataatacaatatattggtGACTGATGGCTTCCTTGgtatattgtttgtgtgtgtgtgctgggatgttaaaatattttataagcaagGGGCCCAAATAGAGGAAAAATTAGCAATATAATCCCCTAGCCCGATGGGGTAATGCTTGAGGTTTTAAACAGAAAGATTTACAGGAAGaatctgcatttcaaaatatcaactATTTTGTTAAGCAACATAATTACCATCATCCACTTTCCTTCACAATTTAACTATACCTTACTTGTCAATAGAATAGCATTTGTCCAGGGTAAATTCCTTCAGGTGAAGCAATTGTTTTTGTCACTGccttaattaatttggaaatcACATTCTGTAAACTAATACACTATGTACAATGGAGTTTAACAGTCAGAAAGGCAAATGTTTTTGCAGGAAGCCCAACTAAGATTATGATGACACCTATTTGGAAAAACACAGTAAGtgcatcaataaaataaaccagtgcTCACAAGACAGAATATCTCTGAAATGTCCTGCAATTGAATACAacagacatttaattttgaacTATTGTATTGTTTCTCCAAAACAAATTGCACTATTTGTTTAAACCAGATCACAGTCCAGATTTATTTGTGGTGTGTGTAATTGGGTCAGTCATTTTCTGTAGTAAACATTTGTTGGGGGGCCACAAATCATGACTAAAGTGAGCAGAAATTCAGCAGACGGAAGACTTGAGTCCAGCTAAGAACTTGAAACACAATAGGGGAAGACAAAAGAGGGGACACAGTATATTGAAAAAATCATGGAACTGCTACATTCagagtattttgtattaaatgtccTTGAATGTGATCGACTGTAATAGAAATTCCCTCACTTACCCTCACAGTGTATTCACAATCCCTGTCTTCAATAATCAGTAGTCCGAACACTCCTTGCCTTCCTGCAATAGTCTATGATTGATTGTGCAGTTTTCGGAGATGAAATGTTTGGAAACTTGCCAAAGTGGTTATTGTTAAACAGTACGCCTGGGCTGCAATTTCTGTTCATCTGGGgtcacattgaaaaataatttagcgctgttgtattttaaaataaataagtaagaacaacaacagcaaatcTGAGGgtataaatgtacatacatttagCGGTGGTAAAGAGATCAAATCTATAAATTATTGCTCATGTTTTAGGCCTTTACCTCATatgtaaagtgtatttttgAACCATGTTGTTGCATCAACATAACTCCTTTTGTATAATCATGTAAGCTGACCTTTGTAACTGAACAAAACCCCCCTCAGATCattattcttatatttttatagtaGTTAGCCACTTTCTTGTGTGTTGGAGGGGCTGTTTGAATATGCCTTTGTTTCAGAGGTATATGAGTTAAAATTTTCTCTAAACTTTGTCAACCCTGGGCCCTTGTACTGATCTCATCAAGTAATGTGGAAAACATTCAAGTACAAGTTATTCTATGACAACTACTGGAATTGAAATATATGGTattagagagaaagagagagagaaacggaaATTCTCAAGAAATAGGATTATTTTATGTCACACTTGTGACTAAAGATAgttttgtctatttttgaatggaTTTAATAAAGAAGATCTGGTCAGTC

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002578 True 5765 mRNA 0.40 2 20505594 20512929

Neighbor

gene id symbol gene type direction distance location
AMCG00002580 LOC108434887,LOC108272386,LOC108232307,LOC106521611 coding downstream 140395 20359557 ~ 20365199 (-)
AMCG00002579 NA coding downstream 231144 20269560 ~ 20274450 (-)
AMCG00002570 LOC103388314,LOC102783449,LOC100707272,LOC101473954,LOC103366223 coding downstream 661977 19838384 ~ 19843617 (-)
AMCG00002569 NA coding downstream 961789 19522852 ~ 19543805 (-)
AMCG00002568 NA coding downstream 1012323 19481866 ~ 19493271 (-)
AMCG00002583 LOC107711341,LOC107691508 coding upstream 614185 21127114 ~ 21128253 (-)
AMCG00002586 NA coding upstream 843003 21355932 ~ 21360543 (-)
AMCG00002585 NA coding upstream 1131431 21644360 ~ 21645046 (-)
AMCG00002589 tmem65,LOC108429253,LOC103374125 coding upstream 1245904 21758833 ~ 21778461 (-)
AMCG00002591 rnf139,LOC106569923 coding upstream 1282425 21795354 ~ 21802954 (-)
G124175 NA non-coding downstream 171140 20302072 ~ 20334454 (-)
G124068 NA non-coding downstream 1221301 19283878 ~ 19284293 (-)
G123981 NA non-coding downstream 1723228 18782145 ~ 18782366 (-)
G123961 NA non-coding downstream 1919664 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 2035987 18469234 ~ 18469607 (-)
G124222 NA non-coding upstream 27378 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 466168 20979097 ~ 21116735 (-)
G124402 NA non-coding upstream 1281844 21794773 ~ 21794988 (-)
G124429 NA non-coding upstream 1405771 21918700 ~ 21918915 (-)
G124431 NA non-coding upstream 1412678 21925607 ~ 21925856 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 2464021 17933464 ~ 18041573 (-)
G123829 NA other downstream 2516129 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 2799305 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 3531293 16958162 ~ 16974301 (-)
G123585 NA other downstream 3665872 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 1134126 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 1388363 21901292 ~ 21902597 (-)
G124719 NA other upstream 2573065 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 2668992 23181921 ~ 23192656 (-)
G124829 NA other upstream 3748636 24261565 ~ 24261823 (-)

Expression


Co-expression Network