AMCG00002579


Basic Information

Item Value
gene id AMCG00002579
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20269560 ~ 20274450 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002579
AAAAAAAGGGCCAAGGTGCGCAAAGGCTTCTGGGTGAGGAGAGTGGGCAAACATGGCGGCTTCCATGCAGAGGCTCTTGTCCttcataaacattaaaaacgcCAGATATAGTTTGGCTCCACTTAGGGTCTCGGTCGTCCCTGCCTGTCGATACAGTGCTAATGTATCCACTACCGGGGAGAAAATAACTCACACGGGACAGGTGTATGATGACACGGACTTTAGACGAGCCAGATTCATCGGAAGGCAGAAAGAGGTCAATGAAAGCTTTGCCATAAACCTGGTGTCAGAGGAGCCAGTCAAAGAGGTGGAGAGCAGAGTGGTCTCCTGtgatgggggaggaggagctCTCGGACACCCCCGGGTCTTCATTAATCTGgATAAAGATACTAAAGTGGGGACGTGTGGCTATTGTGGGCTTCGATTTCAGCAGAAGCATCATCACTGAAGCGCTTGCAttgcctttttttgttgttagtAGTTACCAGATCTCTACGTGCATAATAAATTATTTCCTAAACTGaatcgttgttgttgttgttgtttaaataaaggttaaactttccaacaaaaacaacgtttattcatttttattttattttgaatttataatttgtgttgaTTATAGTATTTTCAATACgatttttcaattgtatttcatGCAGAAACCCATACCATGCTTTGTATATCATATTTTTGTAGTAATccaattattttga

Function

GO: NA

KEGG:

id description
K03939 NDUFS6; NADH dehydrogenase (ubiquinone) Fe-S protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002579 True 719 mRNA 0.41 5 20269560 20274450

Neighbor

gene id symbol gene type direction distance location
AMCG00002570 LOC103388314,LOC102783449,LOC100707272,LOC101473954,LOC103366223 coding downstream 425943 19838384 ~ 19843617 (-)
AMCG00002569 NA coding downstream 725755 19522852 ~ 19543805 (-)
AMCG00002568 NA coding downstream 776289 19481866 ~ 19493271 (-)
AMCG00002566 ube2ql1,LOC107711339,LOC107691500,LOC107754840 coding downstream 865937 19394342 ~ 19403623 (-)
AMCG00002567 NA coding downstream 903316 19362335 ~ 19366244 (-)
AMCG00002580 LOC108434887,LOC108272386,LOC108232307,LOC106521611 coding upstream 85107 20359557 ~ 20365199 (-)
AMCG00002578 NA coding upstream 231144 20505594 ~ 20512929 (-)
AMCG00002583 LOC107711341,LOC107691508 coding upstream 852664 21127114 ~ 21128253 (-)
AMCG00002586 NA coding upstream 1081482 21355932 ~ 21360543 (-)
AMCG00002585 NA coding upstream 1369910 21644360 ~ 21645046 (-)
G124068 NA non-coding downstream 985267 19283878 ~ 19284293 (-)
G123981 NA non-coding downstream 1487194 18782145 ~ 18782366 (-)
G123961 NA non-coding downstream 1683630 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 1799953 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 2063428 18205668 ~ 18206132 (-)
G124175 NA non-coding upstream 27622 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 265857 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 704647 20979097 ~ 21116735 (-)
G124402 NA non-coding upstream 1520323 21794773 ~ 21794988 (-)
G124429 NA non-coding upstream 1644250 21918700 ~ 21918915 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 2227987 17933464 ~ 18041573 (-)
G123829 NA other downstream 2280095 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 2563271 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 3295259 16958162 ~ 16974301 (-)
G123585 NA other downstream 3429838 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 1372605 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 1626842 21901292 ~ 21902597 (-)
G124719 NA other upstream 2811544 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 2907471 23181921 ~ 23192656 (-)
G124829 NA other upstream 3987115 24261565 ~ 24261823 (-)

Expression


Co-expression Network