AMCG00002580 (LOC108434887,LOC108272386,LOC108232307,LOC106521611)


Basic Information

Item Value
gene id AMCG00002580
gene name LOC108434887,LOC108272386,LOC108232307,LOC106521611
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20359557 ~ 20365199 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002580
AGTCGTGGATTTCCTGCTCAAATCAATAATGCGGGCGATGTGGTTTGCGGGGGGCTTCCACTGGATGACGGTGAAGGGCCGCCAAGCACTCAGCACCGAGGCCCCCATCCTGACCATTGCCCCACATTCCTCTTACTTTGACGCCATTCCCGTCACTATGACCATGGCTTCCATTGTGATGAAAGCAGAAAGCAAGGACATTCCCGTGTGGGGCAATTGCTTTCATGACAGTGACGTTGTTTCCAATACGTCTCTTCTTTGCTGCTTTCATGATGTTGCTGGCCTGGCCTTTTGCCTTCCTGGCGACGGTGGGCCGTTCCGAGAAAGCTGTCGAGCCTCAGTCTTGGTGGAG

Function

NR:

description
PREDICTED: lysophosphatidylcholine acyltransferase 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002580 True 352 mRNA 0.54 2 20359557 20365199

Neighbor

gene id symbol gene type direction distance location
AMCG00002579 NA coding downstream 85107 20269560 ~ 20274450 (-)
AMCG00002570 LOC103388314,LOC102783449,LOC100707272,LOC101473954,LOC103366223 coding downstream 515940 19838384 ~ 19843617 (-)
AMCG00002569 NA coding downstream 815752 19522852 ~ 19543805 (-)
AMCG00002568 NA coding downstream 866286 19481866 ~ 19493271 (-)
AMCG00002566 ube2ql1,LOC107711339,LOC107691500,LOC107754840 coding downstream 955934 19394342 ~ 19403623 (-)
AMCG00002578 NA coding upstream 140395 20505594 ~ 20512929 (-)
AMCG00002583 LOC107711341,LOC107691508 coding upstream 761915 21127114 ~ 21128253 (-)
AMCG00002586 NA coding upstream 990733 21355932 ~ 21360543 (-)
AMCG00002585 NA coding upstream 1279161 21644360 ~ 21645046 (-)
AMCG00002589 tmem65,LOC108429253,LOC103374125 coding upstream 1393634 21758833 ~ 21778461 (-)
G124175 NA non-coding downstream 25103 20302072 ~ 20334454 (-)
G124068 NA non-coding downstream 1075264 19283878 ~ 19284293 (-)
G123981 NA non-coding downstream 1577191 18782145 ~ 18782366 (-)
G123961 NA non-coding downstream 1773627 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 1889950 18469234 ~ 18469607 (-)
G124222 NA non-coding upstream 175108 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 613898 20979097 ~ 21116735 (-)
G124402 NA non-coding upstream 1429574 21794773 ~ 21794988 (-)
G124429 NA non-coding upstream 1553501 21918700 ~ 21918915 (-)
G124431 NA non-coding upstream 1560408 21925607 ~ 21925856 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 2317984 17933464 ~ 18041573 (-)
G123829 NA other downstream 2370092 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 2653268 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 3385256 16958162 ~ 16974301 (-)
G123585 NA other downstream 3519835 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 1281856 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 1536093 21901292 ~ 21902597 (-)
G124719 NA other upstream 2720795 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 2816722 23181921 ~ 23192656 (-)
G124829 NA other upstream 3896366 24261565 ~ 24261823 (-)

Expression


Co-expression Network