AMCG00002583 (LOC107711341,LOC107691508)


Basic Information

Item Value
gene id AMCG00002583
gene name LOC107711341,LOC107691508
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21127114 ~ 21128253 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002583
ATGGTACAACAAACGAGCAACACCGAGAACACGGAAGCGGTGCTGGCGGGGGAGTCCACCGACTCTGGGGCTATGGACCTGGGCATGGCGTCTTCCCCGACACCCGGGTCCACAGCGTCCACGGGGGATAAAATGGACCCAGCCTGGTGCAAGACCCCCAGCGGCCACATCAAGAGACCCATGAACGCGTTCATGGTGTGGTCGCAGATCGAGAGGCGAAAGATCATGGAGCAGTCGCCCGACATGCACAACGCCGAGATCTCCAAGAGGCTGGGCAAGCGCTGGAAGCTGCTGAAGGACAGCGACAAGATCCCCTTCATCCGAGAGGCGGAGCGGCTGCGGCTGAAGCACATGGCCGACTACCCAGACTACAAGTACCGGCCGAGAAAGAAGGTGAAGTCCAGCAGCTCCAAGCCGGGCGACAAGGGAGACAAGATCGGCAGCAGCACCTGCAGCAGCAGCGCCAGCACCAAGCCCTCCTTGAAAAAGAGCAGCGGCAGTAAAGCCTCCAGCAAGCCGCACAAGATAGTGCTGGGCAGCGCCAAGACTGTCTTCCCGGACCCGGTCTCCCCCGCCGGCACTACGGATCACCATTCCCTCTACAAATCCAGGTCCGTCTCCGCGGCCAAGCAGATCCCGGACAAGAAAGGCAAGAGGGTGTACATTTTCGGGGGCAGCAATCATGGCATCAGCCCCTCCTCCGTGGCAGTGCCGGCCAGCCCGACCCTGAGCAGCTCTGCGGAGTCCAGCGACCCGCTGAGCTTGTACGAGGACGGGGCGGCGAGCAGTAAGGAGGGCGCCCAGTCCCCGAGCGAGTCCTCGGACCCGCACCGGTACAGCACCATGCGGGCATCTTCGCCCACCCCTTCAGCCTCGcactcctcctcttcctcccagtCTTCGTCCTCGGACGAGGAGTTTGAAGACGACCTGCTGGACCTGAACCCCAGTCCCGGGTTTGACAGCATGTCGCTGGGGAGTTTCAGCTCCTCGGTCCTGGACAGAGACTTGGATTTCAATTTCGAGTCGGGCTCGGGGTCCCACTTCGAGTTCCCCGATTACTGCACCCCCGAGGTCAGCGAGATGATTTCGGGGGACTGGCTGGAGTCGACCATCTCCAATCTGGTTTTTACATACTGA

Function

NR:

description
PREDICTED: transcription factor SOX-4-like

GO: NA

KEGG:

id description
K23581 SOX4; transcription factor SOX4 (SOX group C)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002583 True 1140 mRNA 0.62 1 21127114 21128253

Neighbor

gene id symbol gene type direction distance location
AMCG00002578 NA coding downstream 614185 20505594 ~ 20512929 (-)
AMCG00002580 LOC108434887,LOC108272386,LOC108232307,LOC106521611 coding downstream 761915 20359557 ~ 20365199 (-)
AMCG00002579 NA coding downstream 852664 20269560 ~ 20274450 (-)
AMCG00002570 LOC103388314,LOC102783449,LOC100707272,LOC101473954,LOC103366223 coding downstream 1283497 19838384 ~ 19843617 (-)
AMCG00002569 NA coding downstream 1583309 19522852 ~ 19543805 (-)
AMCG00002586 NA coding upstream 227679 21355932 ~ 21360543 (-)
AMCG00002585 NA coding upstream 516107 21644360 ~ 21645046 (-)
AMCG00002589 tmem65,LOC108429253,LOC103374125 coding upstream 630580 21758833 ~ 21778461 (-)
AMCG00002591 rnf139,LOC106569923 coding upstream 667101 21795354 ~ 21802954 (-)
AMCG00002593 tatdn1,LOC102775897 coding upstream 677091 21805344 ~ 21812132 (-)
G124327 NA non-coding downstream 10379 20979097 ~ 21116735 (-)
G124222 NA non-coding downstream 586591 20540307 ~ 20540523 (-)
G124175 NA non-coding downstream 792660 20302072 ~ 20334454 (-)
G124068 NA non-coding downstream 1842821 19283878 ~ 19284293 (-)
G123981 NA non-coding downstream 2344748 18782145 ~ 18782366 (-)
G124402 NA non-coding upstream 666520 21794773 ~ 21794988 (-)
G124429 NA non-coding upstream 790447 21918700 ~ 21918915 (-)
G124431 NA non-coding upstream 797354 21925607 ~ 21925856 (-)
G124434 NA non-coding upstream 812924 21941177 ~ 21953671 (-)
G124535 NA non-coding upstream 1308633 22436886 ~ 22438729 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 3085541 17933464 ~ 18041573 (-)
G123829 NA other downstream 3137649 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 3420825 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 4152813 16958162 ~ 16974301 (-)
G123585 NA other downstream 4287392 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 518802 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 773039 21901292 ~ 21902597 (-)
G124719 NA other upstream 1957741 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 2053668 23181921 ~ 23192656 (-)
G124829 NA other upstream 3133312 24261565 ~ 24261823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G326323 NA misc CI01000111 null 1120492 ~ 1126583 (-)