Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00002593 |
| gene name | tatdn1,LOC102775897 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 21805344 ~ 21812132 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| tatdn1 | Enables deoxyribonuclease I activity. Acts upstream of or within DNA replication and retina layer formation. Predicted to be located in nucleus. Is expressed in alar plate midbrain region; brain; optic vesicle; and retina. Orthologous to human TATDN1 (TatD DNase domain containing 1). |
| description |
|---|
| PREDICTED: putative deoxyribonuclease TATDN1 isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0000737 | DNA catabolic process, endonucleolytic | biological_process |
| GO:0016888 | endodeoxyribonuclease activity, producing 5'-phosphomonoesters | molecular_function |
| id | description |
|---|---|
| K03424 | tatD; TatD DNase family protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00002593 | True | 850 | mRNA | 0.45 | 9 | 21805344 | 21812132 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00002591 | rnf139,LOC106569923 | coding | downstream | 2390 | 21795354 ~ 21802954 (-) |
| AMCG00002589 | tmem65,LOC108429253,LOC103374125 | coding | downstream | 26883 | 21758833 ~ 21778461 (-) |
| AMCG00002585 | NA | coding | downstream | 160298 | 21644360 ~ 21645046 (-) |
| AMCG00002586 | NA | coding | downstream | 444801 | 21355932 ~ 21360543 (-) |
| AMCG00002583 | LOC107711341,LOC107691508 | coding | downstream | 677091 | 21127114 ~ 21128253 (-) |
| AMCG00002592 | NA | coding | upstream | 3333 | 21815465 ~ 21837472 (-) |
| AMCG00002595 | scgn,LOC106606120 | coding | upstream | 208444 | 22020576 ~ 22039356 (-) |
| AMCG00002594 | NA | coding | upstream | 229248 | 22041380 ~ 22109859 (-) |
| AMCG00002597 | NA | coding | upstream | 366800 | 22178932 ~ 22218008 (-) |
| AMCG00002602 | NA | coding | upstream | 490189 | 22302321 ~ 22323050 (-) |
| G124402 | NA | non-coding | downstream | 10356 | 21794773 ~ 21794988 (-) |
| G124327 | NA | non-coding | downstream | 688609 | 20979097 ~ 21116735 (-) |
| G124222 | NA | non-coding | downstream | 1264821 | 20540307 ~ 20540523 (-) |
| G124175 | NA | non-coding | downstream | 1470890 | 20302072 ~ 20334454 (-) |
| G124068 | NA | non-coding | downstream | 2521051 | 19283878 ~ 19284293 (-) |
| G124429 | NA | non-coding | upstream | 106568 | 21918700 ~ 21918915 (-) |
| G124431 | NA | non-coding | upstream | 113475 | 21925607 ~ 21925856 (-) |
| G124434 | NA | non-coding | upstream | 129045 | 21941177 ~ 21953671 (-) |
| G124535 | NA | non-coding | upstream | 624754 | 22436886 ~ 22438729 (-) |
| G124582 | NA | non-coding | upstream | 785867 | 22597999 ~ 22598555 (-) |
| AMCG00002584 | NA | other | downstream | 126799 | 21647055 ~ 21678545 (-) |
| AMCG00002533 | ulk4,LOC107704090 | other | downstream | 3763771 | 17933464 ~ 18041573 (-) |
| G123829 | NA | other | downstream | 3815879 | 17922452 ~ 17989465 (-) |
| AMCG00002524 | NA | other | downstream | 4099055 | 17690008 ~ 17706289 (-) |
| AMCG00002503 | NA | other | downstream | 4831043 | 16958162 ~ 16974301 (-) |
| AMCG00002596 | NA | other | upstream | 89160 | 21901292 ~ 21902597 (-) |
| G124719 | NA | other | upstream | 1273862 | 23085994 ~ 23296115 (-) |
| AMCG00002629 | sqle,LOC106579093,LOC102798444,LOC106605546 | other | upstream | 1369789 | 23181921 ~ 23192656 (-) |
| G124829 | NA | other | upstream | 2449433 | 24261565 ~ 24261823 (-) |
| G124848 | NA | other | upstream | 2479655 | 24291787 ~ 24339566 (-) |
