AMCG00002594


Basic Information

Item Value
gene id AMCG00002594
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22041380 ~ 22109859 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002594
CAGGCACTGGCATCCCATCGCGCCTATATACTGACAGCACGCATCCCAACAAAGCTTGAACAGACcttcaattattttgaaattcatgGAATCAGCTGTAACAAGCCTGGTCAGcTGGTAGTGGAGTATGAACGGGGCATTGTCTCTCTGAAGCTGGCATCCACCGAAGACGTGAATGAAGTGGTAGCACACATAGGGAACTGCTTGCGACGGATATGCCCTGGTCTGTCTCCCATAAAAATCATGAAGAAGCTATCAATGGAGCCCCCAGAACGCCTCGTAAACATGCAAGCCTTGTGGGACAACCAGAGTGTGGCTGAATCGGGACCTTGtgGGGGCTTCTCTCAGATGTATAAATGTGTCTGTGACTGGCTGGGCTTTCCATACAGGGAGGAAGTGCAATGGGATGTGGACACCATCTATTTAACTCAAGACACAAGGGAACTGAACTTGCAGGATTTTAGTCATCTTGACCACAGGGATTTGATACCGATTATTGCTGTTCTGGAATATAACCAGTGGTTCACAAAGCTTTCTACACGGGACTTCAAGCTGTCTACAGATGTGTGTGATCAGATTCTGCGTGTGGTGGCCCGGTCTAACAGGCTGGAGGAGCTGGTTCTGGAGAACGCAGGCCTCAAAACAGATTTTGCACAGAAGCTTGCCAATGCTCTCGCCCATAATCCTGGCTCAGGGCTCCACACGATAAACCTTACCAACAATGCAATAGAAGACCGAGGTATTTCTTCTTTGAGTGTACAGTTTGCCAAACTCCGGAAAGGCctcaaacatttacatttctcgAAAACCTCATTATCACCTAAAGGGGTGAACAGCCTTGCCCAGTCACTGAGTGCCAATCAGTTGATCCCCAACACCCTCACACACCTCGACCTCTCAGGGAACATACTTCGAGGAGACGATCTCGCGGTTTGTGCTGCTCTTCTGCGAGGCTGTCTACAGAAACTGAGTGTTTTAAACCTGTCAAAGAGTGTCTTCTCTCACAGaaaaggaaaagacaTCCCTCCTTCCTTCAAGCATTTCTTCAGTAGTGCTTTGGCTCTTACCAGCATCAATGTGTCCGGAACGAAACTGCCACCAGAAGCCCTGAAAGCCCTTCTGCTTGGCCTGGCAAGCAACCCCAACTTAAAGGAGGTATCATTGGATCTGAGCTGCTGTGAGCTAAGATCAGGAGGCTCACAAATTCTGGAGGGCTGCATTGCAGAGATCCCCAACATCTCAAGTTTGGATATTTCAGACAATGGTTTGGACTCTGACCTGACAACATTACTGGTGTGGCTAGGCAAAAACAGATCAATTCGGCATTTATCACTGGGGAAGAACTTCAATAACATCAAATCAAAaaatctGGCACCAGTCCTGGACAATTTAGTTCATGTGATTCAGGACGAGGAATCGCCTCTGACGTCCCTCTCCTTGGCTGACTCCAAGCTGAAAAGTGACCTGACAATAATCTTGAATGCCCTGGGAAGTAACAACTCTCTCACTAAGGTGGACATCAGTGGCAATGGGATGGGTGACATGGGAGCAAAGATGCTGGCCAAAGCTCTGCAGATTAACACCAAGCTCAGgACTGTTATTTGGGACAAAAACAATGTTAGCCCTCAAGGTCTACAAGACATTGCTGCTGCGTTGGAGAAAAATTTCACAATCCGTTTCATGCCTGTTCCCATCATTGATGCATCTCAAGCCCTGAAAGCCAGTCCAGAGAAGACTGAGGATGCACTTCTGAAGATTGAGAACTACCTTCTTCGGAACCACGAGACCCGTAAATATCTACAGGAGCAGGCCTACAGACTGCAACAGGGGATTGTCACGACCACGACGCAACAGATGATTGACAGAATGTGTGTCAAAGTCCAAGACCATCTCAACTCCCTGAGGAACTCGGACACAGACACCGTTTTAGAGGATGTTAAGATGGCAGAAAACTTCATGAGGGATGCCAGAAACTCAAAAACACTGTTGCCAAACCTGTACTACCTGGGGGCGGCTTCTCAGAGCGAGGTGAATGGCTCTTCAGCTGGCCCTATCCAAGAGAAACTGGAATCGATGGCTGGGGAAGTGACGCGCGTTATGGACGATCAGCTGCAGACTCTGCTGGAGTCCATGGTGGATGTGGCGGGAAACCTCTGTCCCCATGTGATGAGGAAGACTAACATCCGACAGGATCTGATCAAAGCCAGCATGGGAAAAAtgtccatccctccaaactTTGTGAAGAATGTTCTGTTGCAGCAGTCTGGGATCGACATCATCAACAAAATCAGCGAAGTGAAGCTCACTGTGGCCTCTTTTCTTTCTGATCGAATCGTCGATGAGATCTTAGATGCACTTTCTAGCTCTCAGCAGAAACTGGGTGAGCTGTTGATAAGGAAAGGAAAGCCCCTGGTTCAACAGGAGTCTCTGGAGATGGAGGTGATGGAGGAAAAGGCACCAAAGAGATCTGCCCACATGTCAGAGTACCTGACAGAGGTAGAAAGGCTTGAGGACCTGGATACTTGTATGATGACGCCCAAGTCCAAGAGGAAAAGCATTCACAGCAGAATGCTTCGACCCGTCTCAAGGGCCTTTGAGATGGAGTTCGACCTGGACAAGGCTCTCGAAGATGTTCCCATCCACATCGAGGACCCACCTCCGGCCCCGAAACTAGAGAAGAGGCCATCGGGGGTCATTGCTGAGCTTCCTTCCGAGGAGGGCAAGAAACTCCAGCACTACACCAAACTCAGGCCCAAAAGGAACAAAAAGCAACAGTCCAGCAAGATCACACAGGTCAGTGCTGCTGCACCACAGGAAGGCGAGCAGAACGGCCTCATGGGAAGAGTGGATGAAGGTGTAGATGAATTCTTCTCCAAGAAACTCACCAAGATGGAGACTAAGCGACCTTTTCTGAAGAGTTCCGACTCACAGGAAGGGGGCGGCGAAACGGACGAGAAGAAAAAGCGTGACTCCCGTAAGAGCGGCTTCCTCAACCTCATCAAGTCCCGCTCTTCCAAGTCGGAGAAGCCATCGGCTGCAGCGGTGGCGGGGACAGTGGTGGTCACGGTGAGCGAGGAACCCCCTTCTCCAAAGACACCTGTGAAGACGTCAACGGCCGAACCGGCCAAGAGCAAAGAGGCCAAAACACCTGCCACTGACCAGAGCAGCAGCTCGGACCGCTCTGAGGAACTCAAGACCCCCGACTCCATGGACGAGCACTCAGAGGACTCCCTGAAAGGAGACGGCAAGCCGGAGGGCAAGGGCAGCCCGCAGGGAGGGAGGCGCTACGGTGTGCAGGTTATGGGCAGCGGGCTGCTGGCCGAGATGAAAGCCaagcaggagaggagagcagcTGGTGCCCATAAGACGCATGATTGCTTGCCCAGCCCAGACAGACCAGATGGAAATGCATCAGTAAAGGGTCACCCCACCCCACCAGAGAGCCGAGTTGCTGGATCCACCAAAGGGGACTTGAGTGTAAATACTCCAGAGAAGAGCCTGAAAAGTGAAGGGAAGCCAGAGGCAGCACCAAGGAGCCGCAACTCTTCCTCAGCCTCCAATCCCAACAGTCCCAAACCCCTGCCACAGGGCAGCAAGCCCAGTCTGAGCTGCCGGCCCACAGTTCCTCAGAAGCCACGTACCAGTAGCAGTAAGAGCATAGATGAAAGCCCCGACTCTCCAGGTGGGAGTGTCTCTCCGAAGGTCACTCTGCTGCCACACCCCCTGAAGAAAGCCCAGTCGGAGAAGATGGGAGAGGGCCAGAACAGCCCACTCCTCAGTGGATCTGGCAGCTGGCCTGCAGCTCCGGAAGTGCGGCCAACTTCTATGGTGGAAGCATCCCAGCACAGGAGCCCGATCCGCCAGCACTCGGAGGACAATGGGTCTAAGGCAAAGGAGAGGTCGCCCAACAAAGACCAGAACCAGGGGTCTAAATCTGGGGACTCCGGAGAAGAGGTGGACAaagactttatttttgtatagaaagaaagacaaactaAAATGTACCGCACCACTCCGATCTATCGTTCACCTTTTTCCAATCAGGAATCTGTTGAAAAGCCAGTATCATTTCCCAGCCCTGTCATGTTTTGCCGTGTCCCGGACTGAGCAGAAATGGTgtgaggaggagaagagagagagagaaaaatgagTGTTATTCTCAGTTTGGGTGGGTAGAGTTGCCAAATGACGTGCTTTACACTGACACATTTTCAGAAGTGCTTCAGAGAGAGAAGTTTCTCCTTTAATACTTACACACTGGTAAGAAATAGCCACAGAAAACTACCCAAATGGTTTTACTCAGCCGTTATGTtggttagtgtttttttttaatggctggAAAGGTCTCAATCCAAGGCTAGCATCATTATACAGCATCCTTTGTTATGTAGCCCAATATATCAAGAGCACTGATGGAAACTCCTATAACTGAGTGGTTCTGTGGGCTGAAGTGCGAAAACACTTGAGTGCCTCACATGGAGTTTAGCTTGCTGAACAGCCCTGCTTTGACATGATGGCCTTCTCTCATTCCCACACCGGCTGTTGTATCTGTCTTACACTtggctttttatatatttttttaccagtCTCGAGTATCAACTTGTGAactcgttttttttgtttaagttggtttcttttcattttaacttttttttctctgcaaaaGTCACAGCCACTCTCTGACTCCTACATGGATTAATATGCAGCTTTGAATTTTGTGCTTTGGGATTCAGTTTTTCTTCGGTGCACCTCGAGCTTTAAAGAATTGCTTACTCTGAGAACAACGGCTTCATTTCGCAGATGTTCTTGTGTGTGCACACCCTTGTGAATCGTAAAAGAAGCAGTCAACAAATGTTTGAGCATTTCCTAGTAACCCACCcactccaaaaaaacaaaagtaccaCAGCTGGCATGGAATTGTAAAGTAAtcatgattaaaacaaagacTATGACTAGGATTCAACTGATCATTTTACCATCACGAAGAGTAGATCTGTTGAACTGATCACTACTCTTCGCATCCAGCTTATGGTTTGTAAAGTACATTTGTAATTTCAATGTTTCATTCGGTTCAGTGTTACATGTCATGCCATATATTTGGATTTATTAGTTTGagctgggaaagaaaaaaaaatcttctgccTGCTTTTTTCAGCTGTGAATAATCTCAATAACGTAgctgcacaaaaaaacaaaaaaaaaataatcttcctAGTTTcataaagcaaataaactggACACAAATTGTCTTAAGATGCGTCTTTCACACAGCAGACACTGGACTAGCTGCTGGACTTGAGTGTGACCAGTGTGCAtgtgaagaatatatatatatgtgttcaTGTACACACATCCTGTATTGCTAAGCacactaataaaaaataacaaataaataaaagtttttatataatttattaaaataaataaaggggtGCTTGGTGATGGGTTTTTATCCAACATAAGGGaaatttttttccttctgaaaaTTTACAATATATGAATTAAAGCGCAAAATAAGTGATTAATGGGTTTCTGGTAGTGCACTGTGGTAAGCACAAAGGATAGGTGTAATTTAAATATGGGAAACGGGGATTGCAATATTAGACTAAATATGGATGTatcatttcttaaaaatactggaattttttattcttattaaaatatgggcttttttgttttctttttctcagattttttaattatgcaatatttgacatttttcctgttaaaaaaaGGACATTATTTACAGATTTCATTAAACACTTCTACAGGTTGTGGAGATTtctttgtgtatatttgtaccaataaaaaaaaatgattttacaaattgaa

Function

GO: NA

KEGG:

id description
K20493 LRRC16, CARMIL; leucine-rich repeat-containing protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002594 True 5832 mRNA 0.46 34 22041380 22109859

Neighbor

gene id symbol gene type direction distance location
AMCG00002595 scgn,LOC106606120 coding downstream 2024 22020576 ~ 22039356 (-)
AMCG00002592 NA coding downstream 203908 21815465 ~ 21837472 (-)
AMCG00002593 tatdn1,LOC102775897 coding downstream 229248 21805344 ~ 21812132 (-)
AMCG00002591 rnf139,LOC106569923 coding downstream 238426 21795354 ~ 21802954 (-)
AMCG00002589 tmem65,LOC108429253,LOC103374125 coding downstream 262919 21758833 ~ 21778461 (-)
AMCG00002597 NA coding upstream 69073 22178932 ~ 22218008 (-)
AMCG00002602 NA coding upstream 192462 22302321 ~ 22323050 (-)
AMCG00002603 NA coding upstream 213327 22323186 ~ 22348504 (-)
AMCG00002605 taf2 coding upstream 244259 22354118 ~ 22380792 (-)
AMCG00002606 LOC106595460 coding upstream 271685 22381544 ~ 22389385 (-)
G124434 NA non-coding downstream 87709 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 115524 21925607 ~ 21925856 (-)
G124429 NA non-coding downstream 122465 21918700 ~ 21918915 (-)
G124402 NA non-coding downstream 246392 21794773 ~ 21794988 (-)
G124327 NA non-coding downstream 924645 20979097 ~ 21116735 (-)
G124535 NA non-coding upstream 327027 22436886 ~ 22438729 (-)
G124582 NA non-coding upstream 488140 22597999 ~ 22598555 (-)
G124591 NA non-coding upstream 543623 22653482 ~ 22653719 (-)
G124669 NA non-coding upstream 886960 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 1546125 23655984 ~ 23663572 (-)
AMCG00002596 NA other downstream 138783 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 362835 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 3999807 17933464 ~ 18041573 (-)
G123829 NA other downstream 4051915 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4335091 17690008 ~ 17706289 (-)
G124719 NA other upstream 976135 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 1072062 23181921 ~ 23192656 (-)
G124829 NA other upstream 2151706 24261565 ~ 24261823 (-)
G124848 NA other upstream 2181928 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 4157193 26267052 ~ 26279621 (-)

Expression


Co-expression Network