AMCG00002595 (scgn,LOC106606120)


Basic Information

Item Value
gene id AMCG00002595
gene name scgn,LOC106606120
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22020576 ~ 22039356 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002595
TGTGAATGAAGTTAACTCGCCCATGCCTGGGAGGAGGGGTTTTCTGCTCGTCAACTGcgagagaaaataaaagtggCATCCTGCGCTGCTGAACAGGTCGGGAAGCACATCTCCTGCTGGCGGATACGAGCGCTCTCTGCCAACTCCAGCTTTTCTCTCCTGTTGCTTCCCTTTCTAAATCACTCCTAACTTCCCGGGATCGCCATGGACAGCACCTTTGACAACCTGGACGCTGCTGGCTTTCTGCAGATCTGGCAGCACTTTGATTCTGATGataatGGCTACATTGAAGGAAAGGAGTTGGATGAGTTTTTCCGACACATGATGAAAAAATTGGGTTCTGGAGACAAAGTGTCAGAGGAGAAGGTTCAGCGATTAAAAACGAGGTTCATGTCGGCGTACGATGCCACTGCTGACGGTCGCCTACAAATCCAGGAGCTAGCCAATATGATGCTGCCTGAGGATGAGAACTTCCTGCTGCTGTTTCGCAGGGAGACGCCGCTGGACAACAGTGTGGAGTTCATGCGGATCTGGCGCAAATATGACGCTGACAGCAGTGGGTATATTTCAGCTGTGGAGCTCAAGAGCTTTCTGAAAGACCTGTTTCTGCAGCACAAGAAGGTCATTTCCCCCAGCAAACTGGATGAATACACTGACGCAATGATGAATATTTTTGACAAAAATAAGGATGGACGCCTGGATCTCAATGATTTAGCAAGAATCCTGGCTCTGCAGGAAAACTTCCTCCTACAGTTTAAAATGGATGCTTGCAGTCAAGACGACAGAAAACGTGATTTTGAGCAAATATTTGCTCATTATGATGTTCCCAGCATCAGCGGCGTTGACTTGGACAAGTTCCGCCATATTCTGCTGCATCACTGCGACGTCAACAAGGACGGCAAAATTCAGAAGAACGAGCTAGCGCTGTGCCTGGGCCTGAAAGTCGGCAATTAACTTACAGATGACcgtggaaaatgtttttaaaaacccTAGAACATCCCCACTGTTACTAGCCTGTGGTTCAATGATAACACGTGCTTTTCAACCTGTTGTCATGACAATGTAGCTTTTAGATTTTGAGGACTGTTGCCTGAATACAGAGGGCGAGGGGGGCAGGGGAGTGGACAGcatggcagtgtgtgtgaggcAGCAGCTCTTCTAGTCATTGCACTGATGCTTATGAAATTGTGTCATTGTGAATTTGTGCATTCGTAGCTAATAGTTGTTCCTTCAAAATATTAGTGTTATCTGAATATCTGACTGGAAACACAGTTGTAAGGTCCATGCTGGGTAAACTATTACCAAGTATTTATCAGTGCATTTTGCCAAGTATTTTTCACCTTCCAGAGAGAGGCTTTTCAGAATATTAGTGAGCTGTCTTTGTGGCAGAAGATAAATCATTTGTAATGTTGTGATTTTTCCCCTGTTGCCTTTGCTTGACTGTAGCACTTTGCATGCGCCAACATGTGCAATTAGACCCCATCAGagagtttgtttttatatatatatgtatattgatctgcaaaaacaaataaaatggataGCAAGTAAACCGTATGGAACAAC

Function

symbol description
scgn Predicted to enable calcium ion binding activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein).

NR:

description
PREDICTED: secretagogin isoform X2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23928 SCGN; secretagogin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002595 True 1566 mRNA 0.45 10 22020576 22039356

Neighbor

gene id symbol gene type direction distance location
AMCG00002592 NA coding downstream 183104 21815465 ~ 21837472 (-)
AMCG00002593 tatdn1,LOC102775897 coding downstream 208444 21805344 ~ 21812132 (-)
AMCG00002591 rnf139,LOC106569923 coding downstream 217622 21795354 ~ 21802954 (-)
AMCG00002589 tmem65,LOC108429253,LOC103374125 coding downstream 242115 21758833 ~ 21778461 (-)
AMCG00002585 NA coding downstream 375530 21644360 ~ 21645046 (-)
AMCG00002594 NA coding upstream 2024 22041380 ~ 22109859 (-)
AMCG00002597 NA coding upstream 139576 22178932 ~ 22218008 (-)
AMCG00002602 NA coding upstream 262965 22302321 ~ 22323050 (-)
AMCG00002603 NA coding upstream 283830 22323186 ~ 22348504 (-)
AMCG00002605 taf2 coding upstream 314762 22354118 ~ 22380792 (-)
G124434 NA non-coding downstream 66905 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 94720 21925607 ~ 21925856 (-)
G124429 NA non-coding downstream 101661 21918700 ~ 21918915 (-)
G124402 NA non-coding downstream 225588 21794773 ~ 21794988 (-)
G124327 NA non-coding downstream 903841 20979097 ~ 21116735 (-)
G124535 NA non-coding upstream 397530 22436886 ~ 22438729 (-)
G124582 NA non-coding upstream 558643 22597999 ~ 22598555 (-)
G124591 NA non-coding upstream 614126 22653482 ~ 22653719 (-)
G124669 NA non-coding upstream 957463 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 1616628 23655984 ~ 23663572 (-)
AMCG00002596 NA other downstream 117979 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 342031 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 3979003 17933464 ~ 18041573 (-)
G123829 NA other downstream 4031111 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4314287 17690008 ~ 17706289 (-)
G124719 NA other upstream 1046638 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 1142565 23181921 ~ 23192656 (-)
G124829 NA other upstream 2222209 24261565 ~ 24261823 (-)
G124848 NA other upstream 2252431 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 4227696 26267052 ~ 26279621 (-)

Expression


Co-expression Network