AMCG00002596


Basic Information

Item Value
gene id AMCG00002596
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21901292 ~ 21902597 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002596
ATGGGCATGGCCAAGttCTATGCTACGCTACGCAGCACCTCTGCTGCCCTGCCTGCCCCGGACTTGTTCGCCTGCACCAAGTGTGGCGGCTTCGTGCGGCCTCCTATCATGCAGTGCCAGGCCGGGCACCTGATCTGCGCCGAGTGCCGGCCTAAGCTGCGCCGCTGCTGGGGCCGCCTGAAGAGAAGCGTCCGCAACCTGGCCATGGACAAGCTGGCTGCGGTGCTCGGCCTGCCTTGTGAGGAGCGTTTCGGCCGCAGTCGCCCTGTCGGCGCAGGCGGCAGAAGTGTCCTGCTGGAGTGTCCGGCCTGCTTCCACTTCGTGATGCCGCCGATCGCGCAGTGCCAAGCCGGGCATCTGATCTGCCAGCAGCGTCGGCCGAAGCTGCGCCGCTGCCCGGCCTGTGAGGGCTCTCTTGAGGTCCTCGTCAGGAACTTGGCCATGGAGAAAGTGGCTGCGACAAATCCCATCCCCTCCGAGGTGAGACTGGACTCAGCCCGGAGTGACAGCTCCTCCTCTGCTCAGCCCGGGCAGCTCGCTTGTACAGGTTGTCAGATTCAGACACTGACATTGAATGAGGCCATCTGCCAGTCTTTGTCTATGGATCTGTTTCTGTGGGATAAGTGGCGGCTGTTTTCCGCTCCGTTGTATTACTGGCTCACTCTGATGCCCACAGACGAGCTGGTCCCGGGCTCGGAGGAGTCGCTGCTGTCGGTAGCTCGGCGATCTGCAGGAAGACAAGTCTGCGACTGCGCAAACAGCAGTGAATAG
>TU155964
GCTGCTGGGGCCGCCTGAAGAGAAGCGTCCGCAACCTGGCCATGGACAAGCTGGCTGCGGTGCTCGGCCTGCCTTGTGAGGAGAGCTGCAGCGTTTCGGCCGCAGTCGCCCTGTCGGCGCAGGCGGCAGAAGTGTCCTGCTGGAGTGTCCGGCCTGCTTCCACTTCGTGATGCCGCCGATCGCGCAGTGCCAAGCCGGGCATCTGATCTGCCAGCAGCGTCGGCCGAAGCTGCGCCGCTGCCCGGCCTGTGAGGGCTCTCTTGAGGTCCTCGTCAGGAACTTGGCCATGGAGAAAGTGGC

Function

GO:

id name namespace
GO:0007093 mitotic cell cycle checkpoint biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002596 True 771 mRNA 0.63 4 21901292 21902597
TU155964 False 300 lncRNA 0.67 2 21901665 21902223

Neighbor

gene id symbol gene type direction distance location
AMCG00002592 NA coding downstream 63820 21815465 ~ 21837472 (-)
AMCG00002593 tatdn1,LOC102775897 coding downstream 89160 21805344 ~ 21812132 (-)
AMCG00002591 rnf139,LOC106569923 coding downstream 98338 21795354 ~ 21802954 (-)
AMCG00002589 tmem65,LOC108429253,LOC103374125 coding downstream 122831 21758833 ~ 21778461 (-)
AMCG00002585 NA coding downstream 256246 21644360 ~ 21645046 (-)
AMCG00002595 scgn,LOC106606120 coding upstream 117979 22020576 ~ 22039356 (-)
AMCG00002594 NA coding upstream 138783 22041380 ~ 22109859 (-)
AMCG00002597 NA coding upstream 276335 22178932 ~ 22218008 (-)
AMCG00002602 NA coding upstream 399724 22302321 ~ 22323050 (-)
AMCG00002603 NA coding upstream 420589 22323186 ~ 22348504 (-)
G124402 NA non-coding downstream 106304 21794773 ~ 21794988 (-)
G124327 NA non-coding downstream 784557 20979097 ~ 21116735 (-)
G124222 NA non-coding downstream 1360769 20540307 ~ 20540523 (-)
G124175 NA non-coding downstream 1566838 20302072 ~ 20334454 (-)
G124068 NA non-coding downstream 2616999 19283878 ~ 19284293 (-)
G124429 NA non-coding upstream 16103 21918700 ~ 21918915 (-)
G124431 NA non-coding upstream 23010 21925607 ~ 21925856 (-)
G124434 NA non-coding upstream 38580 21941177 ~ 21953671 (-)
G124535 NA non-coding upstream 534289 22436886 ~ 22438729 (-)
G124582 NA non-coding upstream 695402 22597999 ~ 22598555 (-)
AMCG00002584 NA other downstream 222747 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 3859719 17933464 ~ 18041573 (-)
G123829 NA other downstream 3911827 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4195003 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 4926991 16958162 ~ 16974301 (-)
G124719 NA other upstream 1183397 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 1279324 23181921 ~ 23192656 (-)
G124829 NA other upstream 2358968 24261565 ~ 24261823 (-)
G124848 NA other upstream 2389190 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 4364455 26267052 ~ 26279621 (-)

Expression


Co-expression Network