AMCG00002597


Basic Information

Item Value
gene id AMCG00002597
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22178932 ~ 22218008 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002597
ATGGGTTTCAAGAAAGGAGGCGAAGGAGATGATGATCTTGGCATCAACAGCAGCACAGTCGTGCAGAAGAAGAGGTTGAATGAATTGGATGAAAAGTATGAAGAGTGGTTGGGGGACATGAGAGGAGGAGTTAATGATGGAATGGATAGTATAAGTATGGAAACTTGTCCAAACCTCCTCTACTCCGAAGAAGAGATGGGTGTTAGCAAGCTGAGGTCGCAGACAACTATGAAGCTGCATGTGTTATTTGCTGTCTCATTTTCCTGGGCTCTTCACGAGGTACCTGTACCGCAGTATCAGCACTGGGACCCTGTAACCGCTCAGCTTTATGCCTGTGACCAGTGTCCGCCAGGTACAGCACTGCAGCAACACTGCACTGCCAACAGTCCGACCGTGTGCTCGCCCTGCCCTGAGCACCATTTCTCCGAGTACTGGCACTGGGATGACAAATGTCAGTACTGCACCACCATCTGCAAAGAAAAGCAGTTTGTCCAGCAAGAATGTAACCGCACGCATAACCGGGTCTGCGAATGTATTGAGGGCTACCATCTTGAGGTTGAATTCTGCGTTAAACACACGGCTTGCTCACCAGGATTTGGCGTGAAGGTGCTGGGCACAACAGAAAGTGATACAGTTTGCGAGAAATGTCCAAAGGGATACTATTCAGACAGAGATTCAGAGATGGAACCCTGCATGAAACATCAAAACTGCACACAACTTGGGCTTGCGACCGCCACTCCTGGCACGCCAAAACACGACGCAGTGTGCGAGAGTCACGGCAGAAAAACCCCCTCGGACTGCTTCCGTCGCCACCATCGCTGTCACACAGaTATCACACTGTGTGAAGAGGCCATATTCCAGTTCATCCCCTCTCAAGAGCTGTCCTCCCTCCAGCTGGATGTTTTAATTCAGAGCTTGCCTGGGAGGAAAGTGGATATCCGCAACATGGAGCGCATCCGAAAGACATGCAGCCCTAAGCAACAGATTCTGCACTTGCTCAAACTGTGGATGCAGAAGAACAGGGATCAGGATGGGATGCTCAGCATTATACGAGATGTCAATCATTGCGAGAGAGTGGTGTCCAGGTGTATGAGTTTTAAGAATCTAACGTTGAGCCAATTGACAGCAGTCATGGAAAGCCTGCCAGGAAACAAAGTGAAAGAGGAGGACATTAGGCAAACCATGATGGCTTGTGACTCGGAGCACCGGGTTCTGCAGCTCCTGCATTTATGGAAGATGCAAAATGGAGACCAAGACATTGCCAAAGGACTTTCTCAAAGCGTTCGAAAACTCAGAACCAAGAAAGTCCCCAAAAGGTTACTGAAGAGCATTAAACGCATCATAAACATTTTCAGTACCTCGTCTATACACAAAATGCGTCACAGCACACGCCTCCTCCCCAAACAAAGATATAAACCGAGCAGCATGAAGAACTGCGCGGAAGAAGAGAAAATGTTCATCAAAACGTTGCTCCTAGCTGTGTGTACTGTGGCCTTGTGTATTGACTGCAACACTGACGTTGTGGTGCATGGGAAAGCGCCTACATACCAGCATCAAGATCCAGTCACTGGTAAGATGCTCTCCTGTGACCACTGTCCCCCGGGGACACACCTGCACAGTCACTGCACCGCGACCAGGCAGACTGTCTGCGCACCCTGTCCAGCTTCTCACTACACCCAGTACTGGAATTACCTATACAGCTGCCAGTACTGCAACAATTTCTGCAACGAGAACCAGTTCGTCAAGAAGGAGTGTTCTGCTCTTCACAACCGCATCTGCGAGTGCAGGGAAGGCTACTTCTGGGATTCGGAGTTCTGCCTCAAGCATACGGAGTGCCCTTCAGGATATGGGATCAAAGTGAAAGGAACTGCATACAAAGATACCCTGTGTGAGAAATGCCCTTCTGGGTACTTCTCTTCAAAAACCTTGGGACACCTCTCGTGTGTGAAGCACACCAACTGCACCACTCTTGGCTTGAAACAGGTTCTCCAAGGCACTGCCTGGCACAACAGCTTGTGTGTCCCTTGCAACGATCTTGAAGCTCaagGTAATCTGCCTTTATACAGAGAATTCCTTCCAGATTTCTTTGCACGTCAAAAGATGAAACGTAAGAAGGTGATCCGGTTCGGAATCAGCCTTTTTCGCGAGGAAGGGATGAAGCTCTTGGAAGACCATACACACCTTTCTGCTCAGAAACTCATCCAGGTTTATGTGATGGAGTGGATGTCTCTTCGGAAAACAGGCACAGATCCTGTTAAGACAATAATGGATCTGCTTAAGAAATCGAGTCTCCACAAAGTAGCAAGGAAGTTAGGGAGAAAACTGAAACCCATTTTCGAAAGTAATCCCTGTCATGTTGAAAAGAATTCTAAGCACAAGACTCATTAAGAGCTTGTGCAAGGTTATCTGAGAAACAAATGTCAAACACAccaactaataaataaataaataaataaatagtcgtTTTGTAATCCCTGTCACAGGACATTAGGCAAATAATGGTTTTCTCAAATTGAGAATCAAAGTTTGTGTAGGATATGTCTCCAACATATCCACTGGAGTACACCACAAATGGCTTGCATTTAAGATTCAGTGCTTTTTTGTGCAACTGGATTGTGCCTAGTGGTCAGGTGAACTTTATTTAAAGACCTTAAACTGTTAtcaaacattatattcagatttattttttatttttgtacccCTCTTTGCAGGGAATTACTTGTataacatgatatatatatatatttgaaatgcctTCGCTggtttctgaatatatttttataggcAAATGCTTACAGTATAACAACTTTTCTGGAGCTATGCAATTCCAATCCGATTGGTGTTCATATTGTACTTGATTGCTTACCCACCACCATAATGAGAGGTTTCCTGTCAGGAGAGCAGTTTCTGTATGTTCTTTGTTCTCTGTAGTTGGTTAtgcaattttcttttcatattcttTTTTTGTAGTATGTTTTGCATGCAC

Function

GO: NA

KEGG:

id description
K05148 TNFRSF11B, OPG; tumor necrosis factor receptor superfamily member 11B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002597 True 2986 mRNA 0.45 11 22178932 22218008

Neighbor

gene id symbol gene type direction distance location
AMCG00002594 NA coding downstream 69073 22041380 ~ 22109859 (-)
AMCG00002595 scgn,LOC106606120 coding downstream 139576 22020576 ~ 22039356 (-)
AMCG00002592 NA coding downstream 341460 21815465 ~ 21837472 (-)
AMCG00002593 tatdn1,LOC102775897 coding downstream 366800 21805344 ~ 21812132 (-)
AMCG00002591 rnf139,LOC106569923 coding downstream 375978 21795354 ~ 21802954 (-)
AMCG00002602 NA coding upstream 84313 22302321 ~ 22323050 (-)
AMCG00002603 NA coding upstream 105178 22323186 ~ 22348504 (-)
AMCG00002605 taf2 coding upstream 136110 22354118 ~ 22380792 (-)
AMCG00002606 LOC106595460 coding upstream 163536 22381544 ~ 22389385 (-)
AMCG00002608 LOC106606163,LOC106595977 coding upstream 343109 22561117 ~ 22568988 (-)
G124434 NA non-coding downstream 225261 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 253076 21925607 ~ 21925856 (-)
G124429 NA non-coding downstream 260017 21918700 ~ 21918915 (-)
G124402 NA non-coding downstream 383944 21794773 ~ 21794988 (-)
G124327 NA non-coding downstream 1062197 20979097 ~ 21116735 (-)
G124535 NA non-coding upstream 218878 22436886 ~ 22438729 (-)
G124582 NA non-coding upstream 379991 22597999 ~ 22598555 (-)
G124591 NA non-coding upstream 435474 22653482 ~ 22653719 (-)
G124669 NA non-coding upstream 778811 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 1437976 23655984 ~ 23663572 (-)
AMCG00002596 NA other downstream 276335 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 500387 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4137359 17933464 ~ 18041573 (-)
G123829 NA other downstream 4189467 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4472643 17690008 ~ 17706289 (-)
G124719 NA other upstream 867986 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 963913 23181921 ~ 23192656 (-)
G124829 NA other upstream 2043557 24261565 ~ 24261823 (-)
G124848 NA other upstream 2073779 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 4049044 26267052 ~ 26279621 (-)

Expression


Co-expression Network