AMCG00002605 (taf2)


Basic Information

Item Value
gene id AMCG00002605
gene name taf2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22354118 ~ 22380792 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002605
TACAGGGATCAGTCTGTTGTGAGAGGTCTAAGGGGAAGGATATGAGCTGAGACGGTGTAAACCCGAATTACACAACCCATTTGCACACTCAATATTTGAATATACACCAAAAAAACGGTTTATCCGATGCTGTTTATCAGtataaatagagagagacaCGTATTTTTAACACTATGTGAGAACCCAATGTGTCGGCTAGGTGCGTGGGGACATCATATGACATACCGGTAGCGACGAAAAGTACTTTACGAGACACTTGTGCAAAGAGACtgtggttttgattttgaatgcacAATGAATAAAGATCCGTCTCTGTGCGAGGGGCGATGTATATCCGTACGCTGAAACAGTAACAAGACAAATCGttacatttcttatttgttAATATTGCATCAAGTTTCACGCAAGCAGACCAgggggaaacattttttttcccttctcttttttttggggTGCTGTCTGACCAAATCTATATCACGTCCCAAACGATGTAAAGTACAGTCACGTATTTGTTGGTTCTGTTACTTTTTTACGATTTCGGGATGAATAggaagaaaggagacaaaggaTTCGAAAGTCCTCGACCGTATAAATTaaCCCATCAGGTAGTCTGCATCAACAACATCAACTTTCAGCGCAAATCTGTCATTGGACATGTAGAACTCACGATCTTCCCAACGGTTGCCAACCTAAATCGTATAAAACTCAATAGCAAGCAGTGCAGGATATACAGGGTCAGAGTGAATGACCTCGAGGCACCGTTCATCTACAACGATCCCACTTTAGAGGTCTGTCACAATGAATCTAAACAGAGGAACCTCAACTATTTCTCCAATGCCTATGCTGCAGCTGTCAGTGCCGTTGATCCAGATGGGGGAAATGGAGAACTGTGCATTAAGGTGCTGAAGGTGTACATTGAGTTCTCCTTGGACCAGCCGAAAGGAGGGCTGCACTTCGTGGTGCCTGATGTGGAAGGCAGCATGGCGGAGAGAGGGGCGCACGTCTTCTCGTGTGGATACCAGAATTCTACCAGATTCTGGTTCCCCTGTGTGGACTCTTACTCTGAGCTCTGCACCTGGAAGCTGGAGTTCACGGTGGATGCTTCCATGGTGGCTGTCTCTTGTGGTGATCTGGTGGAGACCATCTACACCCATGACATGAGGAAGAAAACGTTCCACTACATGCTGCCCATCCCCACTGCAGCACCCAACATCTCCCTATCTGTGGGCCCCTTTGAGATCCTCGTGGACCCTTATATGCATGAGGTGACACACTTCTGCTTGCCCCAGCTGCTGCCTCTGCTCAAACACTCCATGTCCTACCTGCATGAGATCTTTGAGTTTTTCGAAGAGATCCTCACCTGTCGCTATCCATACGCCTGCTTCAAGACTGTGTTTGTTGATGAGGCCTATGTCCAGGTGTCATCCTATGCGTCCATGAGTATATTCAGTACAAATTTACTGCACAGTGCCATGATTATAGACCAGACTCCTCTGACCCGACGGTGTTTAGCTCAAGCTTTGGCCCAGCAGTTTTTTGGCTGCTTCATATCCCGAATGTCCTGGTCTGACGAATGGGTTCTCAAGGGGATATCGGGATACATCTACGGCCTGTACCTGAAGAAGACATTTGGAGTGAACGAGTACCGACACTGGATCAAAGAGGAACTGGACAAAATAGTGGAGTATGAGCTGAAGACAGGAGGGGTTTTACTGCACCCAACGTTTTGTAGTGGCAAAGAAAAGGATAAtCCTACCCCACACCTGCACTTCTCAATCAAACACCCTCACACTCTGTCTTGGGAGTACTATAAGATGTTCATGTGTAAAGCACACCTCGTCATGAGACTGATCGAAAACAGGATCAGCATGGAGTTCATGTTGCAGGTGTTCAACAAACTTTTGAGCCTGGCCAGCACGGCATCATCTCAAAAGTTCCAGTCTCACATGTGGAGTCAGATGCTGGTGTCCACGTCTGGATTTCTGAAATCCATCTCTAACGTCTCTGGGAAGGACATTGGGCCTCTGATAAAGCAGTGGGAACTGGATGGATCCTTCAACCACACTCTACAGATCGAAGAAAACAGTCTCAAACATGACATCCCCTGCCATTCCAAGAGCAGACGaaataagaaaaagaaaatcccccTGATGAATGGAGAAGAAGTAGACATGGACCTGTCTGCAATGGATGCGGACTCCCCGCTGCTGTGGATAAGGATCGACCCGGACATGTCGATCTTGAGGAAGGTGGAGTTCGAGCAGGCCGATTTCATGTGGCAGTACCAGCTGCGCTATGAGCGGGATGTGGTGGCTCAGGAGGAGGCCATCGGGGCTCTGGAGAAATTCCCAACGCCAGCATCCCGGTTGGCGCTCACCGACATCCTGGAGCAGGAGCAGTGCTTCTACAAAGTCAGGATGCTGGCCTGCTTCTGcctggctgagATTGCAAACTCAATGGTGAGCACCTGGACAGGGCCACCTGCGATGAAGTCTCTCTTCACCAGGATGTTCTGCTGCAAGAGTTGTCCCAATATCGTCAAGACCAACAACTTCCTGAACTTTCAGAGCTACTTCCTCCAAAAGACCATGCCTGTTGCCATGGCTTTGCTTAGAGATGTGCACAATCTGTGTCCAAAGGAGGTTTTGAACTTCATTTTAGACCTCATTAAGTACAATGACAACCGGAAGAATAAGTTTTCTGACAATTACTACCGTGCTGAGCTCATTGACGCTCTGGCCAACTCGCTCACCCCGGCCATCAGCATCAACAACGAGGTGCGCACCGTGGACAACCTGAACGCCGATGTCCGCCTCATTCTGGAGGAGATTACACGCTTCCTGAACATGGAGAAGCTACTCCCCAGCTACAGGAACATCATCACTGTTAGCTGCCTGAAAGCCATCAGGACGCTGCAGAAGAACGGGCACATTCCCAGCGATCCGTCGCTCTTCAAAACCTACGCTGAGTACGGGCACTTTGTGGATGTGCGGATTGCGGCTTTGGAGGCTGTTGTTGATTACACACAAGTTGACAGGAGCTCCGAGGAACTTCAGTGGCTGCTCGATATGGTTCAGAACGATCCAGTACATTACATCAGGCATAAAATTCTGAACATGCTGGGAAAAAACCCACCTTTTACGAAAACAACAGAGTCTTCTCTTTGTAATGAATCTCTTGTTGATCAACTATGGAAACTGATGAATTCGGGTACCTCCCATGACTGGAGGCTGCGCTGTGATGCTGTGAACCTGTACTACACCCTCTTTGGCCTGAGCAGACCCTCATGCTTGCCTCTGCCCGAGCTGGGGCTGGTCCTCAATCTCAAGGAAAAGAAAGCTGTCCTGAACCCTATTATCAAACCTGAAATTGTTTCGACCCCCCTGGAGCCAGGAAACAATGCAAACCTTGGACCACTCATGGGCTTCCCTATCAGCCAGGAGGATGAGCCCCCAGGCTTAGAGCTGCCGCCCAGTGTGCCGGCCCTTCCTCTGGGACAAGGGTTGAAGAGAAAGGCCGAGACGCCTCTGGGATCCCCGCTGGAGCCTGGTCAGGTACTGGAGAAGGATGAGGACAGcaataaagtcaaattaaaaatcagattttcaaattCTCAGGAGGAGGAAGATATTGATATGGACACTGTTCATGATAGCCAGGCATTCATCTATCATCACCTCAATATGCTTGAAAGGCCATCTACCCCAGGAAAAGAGCCACCCTCAGTAGAGCAGACTATCCTGTCGATGCCCGCCACGCCCATCTCCATATTTGGAAAAGAGACCAACTCCTCATCCAAGCACAGTgaccaccaccatcaccaccaccaccaccacgagcacaagaagaagaagaagaagcacaagcacaagcacaaacacaagcacaagCACGAGAGCAAGGACAAGGACAGAGACAAGGACAAAGAGAGGGACCTGCATCCTTTCTCCATCAGCCCTGCCAGCGGCCGCTCCGTCCGCTCGCCCTCCTTCTCCGACTGAGCAGGGCCACCCGGGGGTCTCGTACCCGTCCTTACAGAAGAAGCCCGTGGAGATTTCCCACGGGGGGATAGGTGGCTGTACAGATCTGGCTTCCTGGCACATCACTCAGCTGTCACGTGTTTTGACCACCCTcaggttttttctttctttctctctttccttcagATGGATGTGCTTCAGTTAGGGTGGTAAAACTCCCAGCATTTCCTTCTGTCTcgtttttatttggtttctgAGCGCACAAAGCACGTGAATTTTACTGGTGCCTGGTTTGCCATCACCGCTGTCATGGCAGCTTTTTGGCCAGTGGTTTTAGGAGGGAAAGCTTGCCATGGGTCAGAGACAGCCAGCTTCCCTTTCCTTCAGACGTCTGCTTTCTCTTTCTAGCTCAGTTTGTCTCTCTTCACAAGGAGCTGTGAAACCTTACATGGGTAATGACAcgtttacataatttaacaagaaGTGTGACATCAGGTACAGAACATTAACACACATCGCactatgagagagagagacgggtgTGTTCAAGGCCTCCAGGGAGTCAACTTACTCACATCTCTCAAAGTTATTTGAGAATCTCAGAAACGTTTGTTGCTCTTGTTTTGAATTTCGTTTTTTTGAAATATGGAAACGCACGTGTGGACCTAAAATGACAAGGAAATCCAGCTTCCtgttaatttgcataatgtttGCAAGCCTTCATAGTGTTGATGCATACTGTTATTCATTCTTAATAATTCCTGATATAAAAAGATTATCAGTATGCTACAAAGTTGCAGATTTCAAGATCACCTGGCTACATTTACTCTTTATATACCAGAAAATGCTGTTAACTTAATGTAGCATTGATAATTGGGccatttagattattttttttgtatgatatTTTGCAATTTACCTTACAGGCACGCATGATTTTGGATGCAGATTCACACCTTTTTCAAAATTTCAACTTCTTcatataactttttatttatatattgtgataCTGTATTACTTTCAGACTCATAGCTTGGTTAAGCATTTTATTATGTAGACTAACTTTTGTTTTAACCTCTTTTTTGGGggagttatttttttttaattcattttactttGCTACAGTCTATACTGTCAGGAAGAAAACTACCAAAGCAAACCAAGACAGTTATTAATGTAACGGTGTTCTTTCTTGccatgtatatacattttaagtgttattaagaaacacaaataaagcatttgatagtacattctttaaa

Function

symbol description
taf2 Predicted to enable chromatin binding activity and transcription cis-regulatory region binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TAF2 (TATA-box binding protein associated factor 2).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03128 TAF2; transcription initiation factor TFIID subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002605 True 5242 mRNA 0.46 25 22354118 22380792

Neighbor

gene id symbol gene type direction distance location
AMCG00002603 NA coding downstream 5614 22323186 ~ 22348504 (-)
AMCG00002602 NA coding downstream 31068 22302321 ~ 22323050 (-)
AMCG00002597 NA coding downstream 136110 22178932 ~ 22218008 (-)
AMCG00002594 NA coding downstream 244259 22041380 ~ 22109859 (-)
AMCG00002595 scgn,LOC106606120 coding downstream 314762 22020576 ~ 22039356 (-)
AMCG00002606 LOC106595460 coding upstream 752 22381544 ~ 22389385 (-)
AMCG00002608 LOC106606163,LOC106595977 coding upstream 180325 22561117 ~ 22568988 (-)
AMCG00002610 NA coding upstream 217832 22598624 ~ 22620244 (-)
AMCG00002611 has2,LOC107673001,LOC107596747 coding upstream 313414 22694206 ~ 22705745 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding upstream 528398 22909190 ~ 22926813 (-)
G124434 NA non-coding downstream 400447 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 428262 21925607 ~ 21925856 (-)
G124429 NA non-coding downstream 435203 21918700 ~ 21918915 (-)
G124402 NA non-coding downstream 559130 21794773 ~ 21794988 (-)
G124327 NA non-coding downstream 1237383 20979097 ~ 21116735 (-)
G124535 NA non-coding upstream 56094 22436886 ~ 22438729 (-)
G124582 NA non-coding upstream 217207 22597999 ~ 22598555 (-)
G124591 NA non-coding upstream 272690 22653482 ~ 22653719 (-)
G124669 NA non-coding upstream 616027 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 1275192 23655984 ~ 23663572 (-)
AMCG00002596 NA other downstream 451521 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 675573 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4312545 17933464 ~ 18041573 (-)
G123829 NA other downstream 4364653 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4647829 17690008 ~ 17706289 (-)
G124719 NA other upstream 705202 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 801129 23181921 ~ 23192656 (-)
G124829 NA other upstream 1880773 24261565 ~ 24261823 (-)
G124848 NA other upstream 1910995 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3886260 26267052 ~ 26279621 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009706 taf2 coding NC_007127.7 CM002900.2 9580699 ~ 9606284 (+)