AMCG00002606 (LOC106595460)


Basic Information

Item Value
gene id AMCG00002606
gene name LOC106595460
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22381544 ~ 22389385 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002606
CGACGCCCATATGACGTGTCGCTCATTCCGTGTCGCTCATTGGACAATCCCGTTGTCAATCACGTTTTCCGTTTCCTTCCTGTTACTATTGCGGGAAAGTTGAACAAGGAAGCGGTGTATTTTGCTGTATATGAatggttgttattatttttacgGCCAGGAAAAGTGTGCTTATATCCCACAAATATGAGGACTCTAGAGGAGGTGCAGGGCACATTACAAATCGCCAAACTCAAAGAAGAAGATTTACATCCAGTCGTGCATTGCTTAACGTTCAGTGAAAGCGTGTCGTCTGGGGACTATTGCCTGATGGAATTAGATGAAACCCTTTGTAAACATATTGAAGCCGGCAAGAGCCTGGTTATCAGGGGCGATAAGGACGAACATGCCGTGCTGTGCAGTGAAGACAAGACCTATGACCTGAAGATAGCTGACACATCCAACCTGCTCCTCTTCATTCCTGATTGCACAACATCGGGCCTTCTCCCGCAAGACACGGGGAAGAAGCTCATTCAGGCTCAGATTTCAGGTTTCTCTAATTCCTATTGGGAGCTCAGACGATGTCGGCCCAAGTTAAAGAAGCTGAAGAAGCTCCTGATGGAGAATCCATATGAAGGACCTCTAGCCGATCAAGAGGCAGGGGGCACTAAGCAAGTGAAGAAGAACTGTTGGCCCAGCTTCAGAATATTCATGCCTGCAAAATTGACGGTATGCTGCTGGAAGATCCTAGATTTTGAATACGAGATACAAATTTTGGGCCATATCACACAGCTGGTGGACTCGGAGTCATGGTCCTTTAGCAAAGTTCCCCTGAGTGTGTGTCTGGAGGAGCTGGGGCCTCTTGAACCAAaGGAGATGATAGAGCACTGCTTAAACTGTTATGGGAGGCGTTACACAGACGAAGCGGGTAGCGTTTCCTTTGCGCTGAATGAAGACAAGGTATGCCAAGCCATGGCCCAGATGCTGTTGCAGAACGCGGTGAAGTTTAACCTGACGGAATTCCAGGAGGTCTGGCAGCAGAGTGTCCCTGAGGGCATGACCACGAGGCTGGACCAGCTGAAGaGTATGGCTCTGGTGGACCGGGCCTCGAGGCCAGAGACCATCTCTCTGCTGAGAGTTGAGGACCTGCCTGAGGACACACAGGAGAGGTTCAATTGCCTGTTTGCCATGCGAGAAAAGTGGACTGAAGCCGATATTGCaccatatatacaGGACTTATGTGGTGAAAAGCAATCGACCGGAGCCCTTTTAACTAAATATGCTCGTACTTCCATGCAAAGTGGGGTGAAGGTTTACAATTCCAGAAGACCGGTAGCAACCTGAGGaactttattctgttttttgtgtttgtttgtttcctgtcagGCTGTATTAGACTCCCAATTGTTTTGCATACAATTTGTATCATTGATTATAAGAAAACTTGTATGGCAAATTCATTGTTTGTCAAAAATGTActtcacaaatataaatacaaaatctactGATTGGTATGGTGCAGTTGgtgaataaatgtaatgtttttta

Function

NR:

description
PREDICTED: sister chromatid cohesion protein DCC1-like

GO:

id name namespace
GO:0034088 maintenance of mitotic sister chromatid cohesion biological_process
GO:0006275 regulation of DNA replication biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11271 DSCC1, DCC1; sister chromatid cohesion protein DCC1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002606 True 1527 mRNA 0.46 9 22381544 22389385

Neighbor

gene id symbol gene type direction distance location
AMCG00002605 taf2 coding downstream 752 22354118 ~ 22380792 (-)
AMCG00002603 NA coding downstream 33040 22323186 ~ 22348504 (-)
AMCG00002602 NA coding downstream 58494 22302321 ~ 22323050 (-)
AMCG00002597 NA coding downstream 163536 22178932 ~ 22218008 (-)
AMCG00002594 NA coding downstream 271685 22041380 ~ 22109859 (-)
AMCG00002608 LOC106606163,LOC106595977 coding upstream 171732 22561117 ~ 22568988 (-)
AMCG00002610 NA coding upstream 209239 22598624 ~ 22620244 (-)
AMCG00002611 has2,LOC107673001,LOC107596747 coding upstream 304821 22694206 ~ 22705745 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding upstream 519805 22909190 ~ 22926813 (-)
AMCG00002615 NA coding upstream 565891 22955276 ~ 22958920 (-)
G124434 NA non-coding downstream 427873 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 455688 21925607 ~ 21925856 (-)
G124429 NA non-coding downstream 462629 21918700 ~ 21918915 (-)
G124402 NA non-coding downstream 586556 21794773 ~ 21794988 (-)
G124327 NA non-coding downstream 1264809 20979097 ~ 21116735 (-)
G124535 NA non-coding upstream 47501 22436886 ~ 22438729 (-)
G124582 NA non-coding upstream 208614 22597999 ~ 22598555 (-)
G124591 NA non-coding upstream 264097 22653482 ~ 22653719 (-)
G124669 NA non-coding upstream 607434 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 1266599 23655984 ~ 23663572 (-)
AMCG00002596 NA other downstream 478947 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 702999 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4339971 17933464 ~ 18041573 (-)
G123829 NA other downstream 4392079 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4675255 17690008 ~ 17706289 (-)
G124719 NA other upstream 696609 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 792536 23181921 ~ 23192656 (-)
G124829 NA other upstream 1872180 24261565 ~ 24261823 (-)
G124848 NA other upstream 1902402 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3877667 26267052 ~ 26279621 (-)

Expression


Co-expression Network