AMCG00002610


Basic Information

Item Value
gene id AMCG00002610
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22598624 ~ 22620244 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002610
AGTAAAATACATGCGGGAGGCAACTCCCTATGTGAAGAAGGGCTCTCCGGTCTCTGAAATCGGCTGGGAGACCCCACCTCCAGAATCCCCCCGGCTTGGCGTGACCTCCTCTGATCTCCCCTCGCCCCCTGCCATCTCCCTCCAGGGAGACAGGAGGTACATCCCCTTGAAAATGTGCTGCGTCACATGGAGTATGACCACCCCAGACCCGGAAAACAGGCAGTTTGAACTTCACTCCCCAGATGCCAAGCACACTGtggttttgaaatgcaaagaCACCGCCACGGCACAGGCCTGGTTCAGTGCCGTACTGTCCGTCACTACGCAGTTTGTTGCCAAGGTGATTGGAGAGGTCAAGGAGCAGACGGGAAGAACAGGGATTGCTGGGAGCCGAGAAATCCGCCACCTTGGCTGGCTTGCCGAGAAGACAGAAAATGAGAAGCAGCGCTGGAAACCAGTCTTGGTGGTGGTGACGGAAAAGGACCTGCTTCTGTATGACAGCATGCCGAGGATGAAGGAGGCGTGGTTCAGCCCGGTTCATACCTACCCACTATTAGCCACGAGGCTTGTCCACTCTGGTCCCGATAAGGGTTCCCCGCAGCCAGGACTGGAGCTCTCCTTTGCCACCCGGACTGGTACCAGACAGGGCATTGAATCCCATCTCTTCAGAGCCGAGACCAGCAAAGAATTGTCCCTGTGGACTAGACACATTGTCACGGGCTGCCACAACTCCGCCGAGCTCATCAAAGAGGTCATCACCAGTTGTGTGTACCAGAACCAGGAGTGCCGACTGACCATCCACTATGAGCAGGGCTTCTGTGTGTCGGCAGAGCTGGAGAGCGGCTCTGTACTAAAACCACTGTTCAGTTACCCTTTCGAGAAGCTGAAGATGTCCTCTGACGATGGCGTTAGGATGCTGTTCTTAGACTTTGGTGGCAAGGAGGGTGAAATTCAACTGGACCTCCATTGTTGTCCGAAGCCCATCGTTTTCATCCTCCATTCCTTTCTGTCTGCAAAGATTGCACGGCTCGGCTTGGTAGCATGAGAGAAGGCTGCCAGGGAATggacagcaaaaacaaattctCCACTGACAGAGTAATCCTGAAGAACAGTAGATGATAGTCTTGCACATGGGAATCAAAAGACTCAAGTTCACTGTGTACAAATGAACATGGGGCGGTGAAAAGCATGGTGAACGGCAAACCGACACCCACAGGAAACAAATGGATCGTGTTTTAAACATTAGATcattaaagtatttaaacagATTACATTACACATGTGcatattgaaatgtaacatGTTAATTActtggtaattttttttttctttcaagaaaaAGTGTATTCTATAGTACTGTAATCACGAAAGGAATTGATAACACTAAGCTGTTTATGTTTTGAATAGAAAAATACTGGAagtattattttgcattcattccagttttgtttgtactttttcagaaaaaaagactGCACTAACCTTAATTTGCAATATGATTAAGGCTAAAAGAAGATTGCTATTCTGTATGATAGTGGTCTAAAACCTTGATTGCAATGTTACATCTGCAGCAGCTAATGTAAATGATGAAGTTTAGTTTGTTCATGCACATGAATtgtagattatttaaaaaaaacaactaaaattaGGTTTTTGCCACCAGTTTGCCTTCATTGCCCCGCAAGGCAGTGCTTCCTGTATATGTACAGAAAATATACTTATTTCCACCCTCCCCCCGCCGCTTCATGGAAATCTAACCATGTTCCAATCACTTTGCCTGGGAGTGCTTTGGATCTAGAATAGggctttttcaatttcaaagatttctTACCTCTTGTGAGAGTCATTGTTCAATCACTGTGATAATTGGACAAAAGAGGTGTCCAGGTAACTAGACTTTCTGAATGTTATCAGTGAAGATGTGCTTCATCTGTGGGACATAAGCTTATACAATTTTTTTCAGTGGAAATTAATATGAAGGAACCATGGCACTGTCTTGAAAGAAAATGAGTTATCTGATTGAGAGTTGTTGtcttctgaatatctgaatgtTCTTAATCATTTAACATAcctacaatacattttgaacctCTCTATTTGTTTAGccatgtggaaaaaatgctCTCACTTATTAATCTAGTTTCCATGAGATTTAATCAACTGATTGTATGTGAATGGGAGACATATGATCATGATGTTCTTCAAATGCTTTTATGATTGCAGTCACCCCCATTTATCAAGCCATGCCCTTCTAATCATAGCTCTCCCAATTCAATCCCATCAGCCTCACCTGTTCACATGTGAAGTTGCTAGTTTTAAATTGGTTGGGAAGATCATGCCCAGGCCAGTCTGAATGGAGGGTCATGGAGGACGACTGATAGGAGGTGTGATTCCTCCTGTGTAGATCTCATCTTGATGAACAGGGGTGAACACAACCCTGAAAGTATTTGAACAGCATTGGAAATGCATAGGTCCCCAATTCTGGTAAAAggtaacaaaatacacattttcacatctGAAAGACAAAAGTGaggttctttttgtttttcacaataacTAGACTTAAAAAAGACTGAAAGATAATCAGACTTGCCAACAAAGCAAATCTTTTCATATATTAATTGctggatttcattatttttaaagaaacataaatcTGTCCTTGGGCAGAAGCAAGATTGACTGAAATTGTTTGTTCTAGGGATGTTAACACTTTTTGTTCCATTGATAATGAGAGTTAGTTTTGGCTTTGGAAACTTAGATTTCTGAAAGGAcaagctaaacaaacaaaaggcaaGGGAATTTCTCAATTGAGCTGCTTTGTTCAGACCTAGAACATGGAAAATCTTGGAAAAGATCCTAGGTAACCAACAATAAGTGCTGGCAGGCAGTTGGGTTCTTCATTGGGTGCAGGTGGCTTTCAGCACGTTGCAGTATTGACCATTGTTGTTGGGCCAAGAGTAGCCCAGCAGTTGGCAGAGTTAATCCAACTATGGGTCGGCGGATTCAGTTCCTGGCACTATTGACAAAGATTTGAGAACTTCACACAGATGTCTGATAAACTTTGTATGGTATAGCAGATGTTTGTGACCAATATAAAACTGGTCATCCTTTGTGGTCAAGAAAATGCACACATGAGaacaatgaaaaatgacaaaCGGAATGCACCTTAAACTATTACAAACTAATTCCCCAACTTATTGTTTCCACATATAGGTGAATGCAGTCTCATAACTAATAGAGTAATGATTCTCCACttctaataaaataagtaatgcttttaaaagacaACTGACATCAATAATAGGCAGTGTGTTACAAATGGAAAGAATGACATGGAAACATCaaccatttctttctttaaaaaaaaatagatatttgagCAATATTTCCAACATTGTCTGTAATTATGGATCCCCAATTGTTCCAAGGTATAGAATTAAAGAATGATTTCAGTTTCAAGTCCTATGAACGCAACAAGAATCTCAGACTGTTGGTTGGTGAGCATTCTAGATCAATACGGATcaaatcctttattttattttcacatttttattttctaaccaCTTGCCAAAGCTTGTGCTTTTTTGATTCAGCTTGCTCTGAGTTTTTAACAGCAAAGCACCCTCACAGCCTTATTGaggcaaataaagaaaagcagtaAGACCATGGACAGTTTGAACATTTGTTTCCATGTGCCAAAATAGTGCCCACAACAATATAATTTGGTGCCTATAGCTGGAACATATGTCCGCATGCGTGAATGCAAAAGTACATACAATCATTTAATGTGGTATGAATGGAGGTGGGTAAGTGGGAAGTTGCCATGATATTGCCTGATATACGATTCCTATCATACTCTGTGTGACCAGGAAGAACAACAAAGATCCAGTGTTCAACCAAGGACAGGAATGCGCTGGCACACACTGCCAGGTCCATTCCCTCCCAGCATACACCATGATGTGAGCACACAGATAAACGACAGCGGAGAACGATGTCATTCTCCAAACATTCAGTTTATTTCTCCGTTGGTCAGATGCCGGCCCTTTGTCCATTATCCGACCAATATTTAATAGGAATAAAAACTGGCTTGGAACTATGCTGCCAAGGACAGAAAGACTTTATTGCGGTCTTTTTTTGTGGTTGATCAATCTGAAACTTGTGTCACACTGTTGTGACATAAAACACTTGCTTCAAGGAGCCGCTTTGCTCTTGGCTTGTTTTGTGGGTGCTTAATCGTTCGCTGGTAACCTCGCCGCCAAGGATTCACTTGACAACAGTGAATGGCTTCTACGTGGCTCATTTCATGGCTGAGAGCTTGGCCTGTAATTGAAAATTTGTGCTTCACATTGTACTGAAAAATGGTATTCAGCCTATTTGCTGAATTTGCACCACTGGCTCGGGTAGGAATAAACTCGCCAACTACGATACCGATGTACATAAGAGTACCGTTGAAATGGTTGAAgattaaaataagatttttttaaacatcaaaagAGTTGTTTGCCAGGTAGCTGAATGTAACGACACAGTatcattgtatttcaaatactGATATTGATAAAGTGGATGTTTTCAAAGAAATCCCACTTAAGTTCTCATCTCAAACTTGTTTTCATGGCACTGTAAGGACATCACTTAACACTGACTATGCCagattacatatatatgtattcacccTCCATAACTCTATCCATAAACAAGCATACATCTGAAGAAAGGACTCAAAAAGAGGAAGTCAATCCTATGAATATCTGTGAACTTAAACAAGGGAAAGCTTCTCTCACAAATAtgtctaattaaaacaaagtaaacttTAAATAAGGTTTGTTCCCTGCCATGAATGTCTTCCACAAGTGTCATTGCTTCATCtataagga

Function

GO: NA

KEGG:

id description
K24064 SNTB; beta-syntrophin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002610 True 4880 mRNA 0.41 6 22598624 22620244

Neighbor

gene id symbol gene type direction distance location
AMCG00002608 LOC106606163,LOC106595977 coding downstream 29636 22561117 ~ 22568988 (-)
AMCG00002606 LOC106595460 coding downstream 209239 22381544 ~ 22389385 (-)
AMCG00002605 taf2 coding downstream 217832 22354118 ~ 22380792 (-)
AMCG00002603 NA coding downstream 250120 22323186 ~ 22348504 (-)
AMCG00002602 NA coding downstream 275574 22302321 ~ 22323050 (-)
AMCG00002611 has2,LOC107673001,LOC107596747 coding upstream 73962 22694206 ~ 22705745 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding upstream 288946 22909190 ~ 22926813 (-)
AMCG00002615 NA coding upstream 335032 22955276 ~ 22958920 (-)
AMCG00002614 NA coding upstream 339471 22959715 ~ 22968693 (-)
AMCG00002617 NA coding upstream 351261 22971505 ~ 22986571 (-)
G124582 NA non-coding downstream 69 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 159895 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 644953 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 672768 21925607 ~ 21925856 (-)
G124429 NA non-coding downstream 679709 21918700 ~ 21918915 (-)
G124591 NA non-coding upstream 33238 22653482 ~ 22653719 (-)
G124669 NA non-coding upstream 376575 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 1035740 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 1253434 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1790785 24411029 ~ 24411336 (-)
AMCG00002596 NA other downstream 696027 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 920079 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4557051 17933464 ~ 18041573 (-)
G123829 NA other downstream 4609159 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4892335 17690008 ~ 17706289 (-)
G124719 NA other upstream 465750 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 561677 23181921 ~ 23192656 (-)
G124829 NA other upstream 1641321 24261565 ~ 24261823 (-)
G124848 NA other upstream 1671543 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3646808 26267052 ~ 26279621 (-)

Expression


Co-expression Network