AMCG00002614


Basic Information

Item Value
gene id AMCG00002614
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22959715 ~ 22968693 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002614
TCGCAGCAACGCTTTACGACCTTGTGAGAgacgagggagggagggagggaggggagtgtCGCTTGGCGATGACGCAATTACGTATTTCATCTGTGGTGACGCCCgGCTGGAAAGCAGGGCAGCCCGCAGTGGAAGTGTGGACGGCGCTGCGCAGCTGGAAaggcactgtatttttgttgtgcATCTGTGGCCGCAGCAGCGCACTCATCTTGCTGCCGCGGCTGGAGCCCAGCGACGACTGCTGCAGTGGAGCCCGCTGTACGGGCGCCGGAGGGAGTGCGGGACACACAGGGAGCCTCGGCGGCGTGTGGCGGCCGACTGACTGCCCGTACTGGATGAAAAAGTACATGTGGGGATTGAGTGAGTGTTggacataaaaaatgaaaggccAGTGAAAACCATAAAAAAGGCAACAGTGAAAGATTTTAAGTTGCTGAACACTCCCTTTTTGGGGCATCATTAATACAATGGCAAGCAAAAGAAAGTCCACTACCCCTTGTATGGTCCTTCCTGCAGATGCAGAGGAGCAGGACCCAGACATGGAAATGATTGCAGAGGTGGATGAAGGTACTGAGGCCACAGCAGAGGCCCCGACAGAAAGTGCTGCTGTTCCGCTGGAAAATGCATCCGGTGAGGAGGACATACAGGATGTCGACAGCTACATCGAAACGATGGACTCCAGGAAAGTGGAGGGGGGTTACGAGTGCAAATACTGCAGTTTTCAGACCACAGAACTTAATATGTTTACGTTTCACGTCGATTCCGAGCATCCCAATGTAGTCCTGAACTCGTCCTATGTGTGCGTGGAGTGCAATTTTCTAACCAAGAGGTACGATGCACTCTCGGAACACAACATGCGATTCCATCCGGGGGAGGACAATTTCACACGGACCATGGTGAAGCGCAACAACCAGACCATCTTTGAGCAGACTGTCAACGATCTGACCTTTGACGGCAGCTTTGTACAACAAGAGAACCAGGAAAGTGAGGACACCACAACAACGGGTATCCCGCTTAGCAAAACGCccatcatgaagatgaagagCAAGGCTGAGCCTAAAAGAATTGCCATGTCGCATAAAACATCTGAGGAAAATGATGTCAAAGATGAAAGTGAAGGTGAACAGGAGCCCAAGGAAACTGCCCCTGTCAGCACACCAGCACCTGTCGAAGTGGTGGCCCCCGTTCCCGTGGAGCCTGTGAAGCCCAGTGTTGTGGTCAATAATCCCACGCAGCAGGAACCAAAGAAGACCATCATCAACTCAGCTACTGTTTTGCCTGCAGGTCTTGCCCAAGTCCTGTCTGCCCTCCAGGCCCAGCAGAATTCCCAGACACAACTCTTGATACCCGTAAGCAGCATTCCAACTTATAATGGGGCCATGGATAACAATGCTCTTTTGGTCAACACCTACAACAAGTTTCCCTACCCCTCGGTTTCAGAGATCATGGGATTATCATCACAGACTAAGTATACAGAGGAACAGATTAAGATCTGGTTCTCTGCCCAGCGCCTAAAACATGGGGTGAGTTGGACGCCTGAGGAGGTTGAAGAGGCCAGGAGAAAGCAGTTCAATGGCACAGTGCACACTGTGCCACAGACAATCACAGTCATTCCAGCCCATCTCTCAGCTGCAGCTAACGGCCTGCAGCCCATCCTTCAGACCTGCCAAATAGTTGGCCAACCTGGCCTTGTGCTGACGCAGGTTGGAGCCACCAACTCCTTGCCAGTGACTACTCCCATCACATTGACAGTAGCCGGTGTCTCGAACCAAGCACAACTGCCAAAACCCACTATCCAGACAACACCCACCATCGTGGAGACCAAGAGGGCCACCACTGTCCAGCCTCCTCCTCTTACACCTCAGGAGAACTCGGCTCTGAGTGCTGATCACTTTGGAATACGGCCTAAAAAGTCCAAAGAGCAGCTTGCAGAGCTGAAGGCCAGTTACTTGAAGGAACACTTTGCCAGCGATGCAGAGATAGCCAGGTTGATGAAGCTGACAAACCTCACAAAAGGTGAGATTAAGAAGTGGTTCAGCGACACACGTTATAATCAGCGCAATTCGAAGAACAATCATGTCATCGTCTTCAATGAGAACAACAATGCCAATAACAGTGCTACCATAGTGATAGACTCTAGCGATGAAACCACAGAATCTCCCACATCGGGCCCTGTCAAAGAGCCACGCAGACAGAGCTGGAACCCTTTCCCAGACTTCACACTCCAGAAGTTCAAGGAAAAGACCCCTGAACAATTGCTGGTTCTGGAGGAAAGTTATCAGAAAAATTCCACCCCTACTGATGAAGAACTGAACAGACTTAGGTCAGAAACCAAGCTGACCCGAAGAGAGATCGACGCCTGGTtcacagaaaagagaaaagccCCGGAGTCCGCCGAATCAAAACTGGAAAGGAAGGATGGTGAGCCAGCTAAAGCCGTCACCCCCATGAAGCAGTCATCACATACTCATCCCAGTGGCAGAAGCAGATCAGGCAGAGAGAAAATTGGGAAGAAGACACCAGAGCAGCTGCACGTGCTGAAAAGTGCCTTTGTACGCACACAGTGGCCGTCTTCAGAGGAGTATGACAAGCTTGCGGAGGAGAGCCGCCTTCCAAGGTCCTACATCGTCAACTGGTTCGGAGACACGCGGTACGCCTGGAAAAATGGCAACTTGAAATGGTTCTTTTACTACCAGAGTGGAAACATCGGTGCTATAAATGGGAGTGGCtacaggaagagagggagagggagagctcGAAGCAGAGGCCGAGGGAGGCCCAGAGGGAGGCCAAGGGCAGGCAAGAGATCTTCCAGCTGGGGGAGGTCCCCGCCCGTGATTAAGTTCAAGACCGGAAAGGAAATTCTGAAGGAGTACTACTTAAAGCACAAGTTCCTCAATGAGCAAGACTTGGACGAGCTGGTGGCTAAATCCAACATGGGCTATGAGCAGGTCCGGGACTGGTTTGCTGAGGTTCGCCGGCAGGAGGACTTGGGCACGGACCCGTTCGACGACAGCTTGGAAAATGAGGAGCCGGACGAGGAGGATGAGTCACAGGGTGAGAGCGACACGGGAGGCGGAGGCCAGGGAGACATTGCTGGTGATGAGGATGACGATGAAACGGATGACAGCGACACTTGGGAGCCGCCTCGAAGTGTCCGACGAACTCTCTCTGGGTCAGAGGATTAGTGCCCATCTAGGGGAATGCTGAGaatCACCCTTTTGTTCAAGCCGAAGCAGAGAAATGGAAGCTGATGAGTCTGTGTGGAaaaagagcagagcagagcaaagCTTTGTTACACGGAGAATAACTCGACCTAAAGGAACAGTTTTAAGTTCTTTCCAAATCATGTGGAGATGGTGCCAAAGTTACACTGCACAAGGCATAGCTTTCTGTGCTATTTTACAGAGTGCTTAATTAGTGAATTTGTCCAAAATGGGGACATTGTCTATATGATGATTAAGTCTCTGAGCACATAATGTATTAGGTACAGCAAccactattttttattttctcttggaTATTACTATGGTGGTGAAGTGTGATTTACTACCCTAAATCTCTGTGGTTATGAAATAGCTTTGAGAGACCAAATGTTTTATTACCTACAAATTAACttctaagcaaaaaaaaattgaactgcATCCCCCATTACATGAAGTGGACAGAAGAAGTCATATAATTTGCACCTGCTTGTCCTTGTTTTAACCATACAGTGAAAGGGGATGCAATACAAATCCATGCTTGTAGCTGGTGTGTATATTACACTTTTAGACTGGTACGACCGCCTTTGATTTCTAGGCCCTGTCACTCTACCATTTTATCTGTCTCCCCAAAGACTTCAATTGAACTGACTGCAAAGCCAcattaatatttgaatgtacttttgtttttaaaagtaagaTGAATCAAAAAGTTCCCAACATGTTCCCAAAGTTGGTAAAGCGGTTTATTCTAATCAGATTTTACAAGTTCAATTTTAAAAgatgctttttatattttttattgcaaacCAGGAAATGTGCCTGATGAAGTAACAGGAAAGATATATAGCTCAAAATCTATACGATTCAAAAGAAGTGTGCTGCTAAAGATGTCATGTGAAAAGGCTTTCAGGACAAGTCATTGTGGTGTTTTTCAACATCTGGTTAAGAAAATAATGGTTTAAGGGGAAATAACAAGCCAATTGTTATCACACATATGGTAGTTCCTGTCAATATTTTGTCCAAGAGTCCAAGACTGTGCTTAGAAATCTGTAGCTGAGATTAATTGGGTTGTATCGTTTTTGTGGCAAGAACAAACAAGGTgcaatgaagaaagaaaagaaaattaactaCTCTTTATCAAAATGCTTGGTACAGTAATTTAGCAAATCTTCAAACAGTGCTACAGTAGAAAGCAAATGTAGTTGTCTCCCTCCCTTCTGTAAGTGAGAAACAACACAGTATCTGTACCAAACATGAATGGAGTGCTCGGCAGTATAGAAGCATCCCTGTACTGTGCTACAAAGTGAGGTGGCTGCATGGCAATTGTgtagaatttatttttgtttattttctcaaattgtGAAAGCTTACGCTTTGCTGGggtttatactttttttttttttttaatgaatcctGCAGGGATACAGTACATACTGTATCACCAATAAGTAATTTGGGTTTTAGGTATGCTACAATCAAACAACTTCACAACTTGTATAAATTTAGACTTCGCTGCTGTGTTATGCAAGTAGGGCACCTTTATATACACTGTAACTGTTCTGTAACCCATTTTTCTAGCTGTGGGCCCAATCAtgctttactgtacattgtacacgtatttattttctgttcaaaaatcaaaacagacatTAATAAAAAGAGCATCCATAGTCAGTTATAGAGCAATAATGTTGTTAAGAAAGTGATCTGTGTATGATCAATGCTTTTAGATTTTGTATCATTGGGATAAACTACTCTTTGCTAAGGAAGTTCGGTTTGTTTTATGTCCGCAGCTGTGTTTGTTATAGTTTTGCCTTCAGAAAGCATACAGTACAgtgcccacccccccccacacacacacataaattatACCGCAGTGTGTTGTAGGAGCCTGACTCTGACCACAGTATGTGCAGCAGATCCAGTTGTATTAGTAAGTAAAATGTGCAAGGCTTATaggtactttaaaaaaacaaaaaaatgttgctgTTTTAGACTATTGTTGAAGAAGGTTCCAGCttgcaataataattaaaaaaaagtattcacttTGTATATATAAGATCTTTTATGCTGTTCTATTTGATCAATAATTTTTaagaattttatattttatttataagtgtTTCAATGTAGCCTCCACTTCAACATAGTACTCAAGTGGTGTCCATGAAGGTCTACAACATTGGGCAGTCCTGccatattttgtgttgttgcttaCATCTTTTTTCTATTCTGTTGTtgctaaaaaaacataatctccCAGAGGAACTCTTTCAGGATTCAGACCAAGACATCTCTTATTCCATGTGACACGTCTAAGAATTCTGGGCATCTGCAAACATTCGCCAACAGCCTTTACTTGAACCACAACTGACACAGAGACGCTACACGCGGAAAGTTGTATCCGACCGTGGTAATTGCAATGAATGCAGTTCTTAAAGCTACcctccttttgtttttggtttgtttctctcaaaatgtaaaattttaaaaaaataatacaacactgTTCTTCAAATTCTGTTTCCAATCTCTCTTTCAATTCAAGCTTCATCAAAGACCAGTGGGATTACGAAATCTACATTATCATATCTTCAGATCTCGTGTTTTATGATGGCTTTTAATTCAACCAAGGACTAATAAATGAACGGATCTACTTCAAAGCCACAGCCTGCAAATGCTTACTTTTCCTTATTTCATGATTTTAGAAAGGTGCAAGTAATGACTTAACCAGTAAAAGGTAGAAAGTGTCATCTGGTATGATAAACACTTGGTCCATAGTTATATTGGAAACTAACATGAGGCTGTCATCTAGTGGTTTTTGGATCTGCGGGTCTAAATAGTAACATTGTTCTAATTTGTGGTAATCCGTCCACTTCTCACCCAGATATCgaagactatatatatatatatatagtgatggtgatatatatatatatttaaaatgttgtaaatctCTTTGAATGTTTTGTATTCAAGGGGTTGAGTGATGGAGTACCCATAAGACTGTTAGAAACTGTGGACCCCCCTGCAAGTACTTTGTTGTCTGTGGCAAGAGCTTTATTCCTTAGAGCAGTAGGCATTTGCTTAATCAAATTTAAGtctgaaaaagaaatgtttttaagcAGCTAAATCTTCTACTTGGGTTTCACAGAATTTATCTTTTATACTGATGTGTTG

Function

GO: NA

KEGG:

id description
K24879 ZHX1; zinc fingers and homeoboxes protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002614 True 6389 mRNA 0.44 4 22959715 22968693

Neighbor

gene id symbol gene type direction distance location
AMCG00002615 NA coding downstream 795 22955276 ~ 22958920 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding downstream 32902 22909190 ~ 22926813 (-)
AMCG00002611 has2,LOC107673001,LOC107596747 coding downstream 253970 22694206 ~ 22705745 (-)
AMCG00002610 NA coding downstream 339471 22598624 ~ 22620244 (-)
AMCG00002608 LOC106606163,LOC106595977 coding downstream 390727 22561117 ~ 22568988 (-)
AMCG00002617 NA coding upstream 2812 22971505 ~ 22986571 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding upstream 21560 22990253 ~ 22996520 (-)
AMCG00002627 NA coding upstream 32034 23000727 ~ 23012696 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding upstream 50253 23018946 ~ 23028347 (-)
AMCG00002625 NA coding upstream 65115 23033808 ~ 23036859 (-)
G124591 NA non-coding downstream 305996 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 361160 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 520986 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1006044 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 1033859 21925607 ~ 21925856 (-)
G124669 NA non-coding upstream 28126 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 687291 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 904985 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1442336 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1607472 24576165 ~ 24577131 (-)
AMCG00002596 NA other downstream 1057118 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1281170 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4918142 17933464 ~ 18041573 (-)
G123829 NA other downstream 4970250 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5253426 17690008 ~ 17706289 (-)
G124719 NA other upstream 117301 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 213228 23181921 ~ 23192656 (-)
G124829 NA other upstream 1292872 24261565 ~ 24261823 (-)
G124848 NA other upstream 1323094 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3298359 26267052 ~ 26279621 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03008262_03011156 NA coding CI01000027 null 3008262 ~ 3011995 (+)