AMCG00002615


Basic Information

Item Value
gene id AMCG00002615
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22955276 ~ 22958920 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002615
CACACTACAACTTGCTGAAGATAGTTTTTAATTCCACAGATGGAGGTTTTTGGCTTTGATTTTGACGATTCCGTATTTGCAGAAACCCGAGATAGGGTTGCAGTTACACTTTCTTCTTACAAGGCGAAATACTGTGAGCCAGAGtgGTTTTGTGAAGAAGTCAGCACGGACGATGAGCTTGAGAAGCAGAAAGTGTTTAAATTCAGAGCAGACCTGGCCTACAGACGGCATGACTATGAGAAAGCTCTGCGTGAATACCTGAACTGCTTCTCTCTGGTGCCGGACAGCAACATTGCCATCAGGCGCGACGTTCTGGAGAGTCTGTCTCGGTGCTACTGTCGACTGGGCAGACCGGAGAAGGCACTGGAGATTGCTGAGCAACTGAGGAAGGATGCCACAAATACGGGCCACCTCTCAGCAGTGTTAAACCTGCAACTGACCCTTCACTGCAGCAGCGGAGAGCTGAGGAAACAGATCTCTACTCTGCAAGATCTCATTTCCCTCATGCCTTGCAACCCCTGCCACTGGAAGAAATTGGGAATGGCCTACTTGAACATCTTCAAGTCTCTTCCCTCCTCTGGCCCAGCAAGGACTGCCACAGTCAGTCCTGCCCGCCCTGATGGCTGTAATGGAGTAGCAGATCCTTCACAGCGGCGCTCCAGTGACTGTCTGGAGGGTGTAAGCATCGCGGGACCTTATACTAGACATGGAGAGGAGGAGAACCCAATCTCTGACAGCCACAGAGGAGAGCCGGAGGTAAAGACCACAACGGAAGAACAGGGGAATGAAGAAGCGCAGGACGTCTGGCTGAGGGCCTGCGTTTGTTTTGTACGATCAAGCCTGCTGTTCAGGATGGTGAAATTCCAGCAGTCTTCCTTCGTGTCTCAAAGTAACAGAAGGGCTCGGGAGGAGATCGAGGGGGCGCTCCGCACATTGGACCTAAAGGAGGAGGTACTGCGTGTTATCACAGAGGTGATGGGTGAAGACCTCGTCTCTGAGAAGCTGAAAGAGGAGAGTCAGGAGACGGAGAATTGCTCGTCTCTGGCCAGTGTACAGGTGCCCTGTGAAACTGACTTTGAGGAGAGGTGGTTTAACAGACTGAAACGCATGGTCTTTAAATCTGGTAACCAAGAGCTGCTTAGTTACAGTGACACAAAAAAGAACGAAGGATAATTCCTTTCGAAAGGGTTTCATGGGATGTAAATTGGCTGACTTTGATTCTCATTCTTGCGGATTCCCATCTGCAAAAGCCTTTAATGCATTTTGGGCTGAACGGGCGACGGCACGTCCGTCTGGGCAGGTTGCGGTGTACTGAGCACAAGGCTCCGAACAAAGCACGGCTTGTTGTCTGAAAAGAGGCAGGCTGGTTGTTACGGTTTTAGATAGGCCGCTGTTTTCATTCCAGACCAAACAGCGGGTCTGAGGGAAGGGGACTGGTTAGTTGGGAGTCACTAGTTGAGATTCCATAGTGTACAGATAAAAGACCGCAGCCACACAAGACCGAAGAATACAAAGAAGACTGAATGACTCAAACCTTTTACATCTCAGTGCTTCTGTATTTCTCTGACTGACTGCCTCAAGGAATGAACTGCATTGGAGCATTTCTTTGTTAATCTGAGCCTCACTTATTAAGACTGTGTTGTCATCAAGGTCtcagacagaaaatacatttagaaaaaaccTGAtttaaatagttacatttttgtataatcCTTCCTGTATGCACAATAGATGAAATTGAACTCTCGGTGGAGTGGAGTCCTGTGATTGGTCTGTGTGAGGCCACACTGATGAGGTCACAGCTCCTCCCATTGCATGATTATAATTAGAAAGTGGCCGTAGCTATTaacaaatttagtttttattgcatTAACTATACCAGTTGTTTATATGAGCCTATTATGATGCATGataatgtaaattgttttactactattttaataaaatatttattttgtaactaaATTTTAAACCTTGCATTTGATGTATTGTTATTTGACAAAATATCGCTATAGAATAATAT

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002615 True 2023 mRNA 0.46 6 22955276 22958920

Neighbor

gene id symbol gene type direction distance location
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding downstream 28463 22909190 ~ 22926813 (-)
AMCG00002611 has2,LOC107673001,LOC107596747 coding downstream 249531 22694206 ~ 22705745 (-)
AMCG00002610 NA coding downstream 335032 22598624 ~ 22620244 (-)
AMCG00002608 LOC106606163,LOC106595977 coding downstream 386288 22561117 ~ 22568988 (-)
AMCG00002606 LOC106595460 coding downstream 565891 22381544 ~ 22389385 (-)
AMCG00002614 NA coding upstream 795 22959715 ~ 22968693 (-)
AMCG00002617 NA coding upstream 12585 22971505 ~ 22986571 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding upstream 31333 22990253 ~ 22996520 (-)
AMCG00002627 NA coding upstream 41807 23000727 ~ 23012696 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding upstream 60026 23018946 ~ 23028347 (-)
G124591 NA non-coding downstream 301557 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 356721 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 516547 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1001605 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 1029420 21925607 ~ 21925856 (-)
G124669 NA non-coding upstream 37899 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 697064 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 914758 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1452109 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1617245 24576165 ~ 24577131 (-)
AMCG00002596 NA other downstream 1052679 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1276731 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4913703 17933464 ~ 18041573 (-)
G123829 NA other downstream 4965811 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5248987 17690008 ~ 17706289 (-)
G124719 NA other upstream 127074 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 223001 23181921 ~ 23192656 (-)
G124829 NA other upstream 1302645 24261565 ~ 24261823 (-)
G124848 NA other upstream 1332867 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3308132 26267052 ~ 26279621 (-)

Expression


Co-expression Network