AMCG00002616 (derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495)


Basic Information

Item Value
gene id AMCG00002616
gene name derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22909190 ~ 22926813 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002616
CCAACAGGAAGTGCCGCTCTCTCACAAACTAGCCCTGAGAGGCCACGTCAGGAAAACTTCAGTCACAGAGAAACGAAGACAAACGTCAATACTATCTCCAAATATCTCCCCCCGACAGCGACGCGGGGACCAGGGGGCTTCTCGGTGTTTCCTCCCTTTGGAGCTAGACAGGCTTCTGGTGGACTGTGGGAAGTGGGTGTCTGCACAGCCAAATCTACACAACAATGTCCGATATCGGGGACTGGTTTAAAAGCATCCCCTTCATTACCAGATACTGGTTTGCTGGGTCAATTCTAGTACCTCTTATAGGGAAACTGGGACTGATTAGCCCCGTGTACCTCGTCCTGTGGCCGGATGCTTTCATTAACAAATTTCAGATATGGAGACCATTCACCTCAACACTGTACTTCCCTGTGGGCCCTGGGACTGGATTTCTGTACTTGGTCAATCTTTATTTCCTATACCAATACTCCACAAGACTTGAAACAGGTGCCTTTGATGGGAAACCAGCAGACTACATATTTATGCTGATTTTCAATTGGATCTGCATTGTTATAACGGGATTAATAATGGACATGCAGCTTTTGATGATTCCTCTGATAATGTCAGTCCTGTATGTGTGGGCCCAGCTCAACAGAGACATGATTGTGTCCTTCTGGTTTGGCACCAGATTCAAGGCCTGCTATCTGCCATGGGTGATTCTTggattcaattatattattggAGGATcCATTGTTAATGAGTTAATTGGAAACCTTGTTGGGCACTTGTATTTCTTCCTGATGTTCAAGTATCCCATGGATTTGGGAGGGAGAGAATTTCTGGCAACACCACAGTTCCTGTATCGCTTCTTCCCCAGTAGAAGGGGTGGAGTCTCTGGGTTTGGCGTTCCCCCACCCAGCAGGAGACCTGCAGCCAATGAGCAGGGCGGGGCTGGGGGTGGGCGGCACAACTGGGGCCAGGGCTTCAGGCTAGGAGACGACTGAGGAAGGAACTGCTCAACATGGAGAGAGGACTTTAACGACGGCACAAATGAATTGATGCATCACAGCAGTGGGGGGTTTTTGTacaaaagtttgtttttccccctgacTGCCTGGGATGGACTGTAAGGAGCAACAGTTGATCCAGCAGTAGTGGCAAAACTGAAAACcagcatgattttttttttttttttttttcctgctttcacATTACACTGTACACATAAAACTGACCTATTCATAATTACAGTCAAAGACGTTGATTTTCTGAAATTGCGGTTGTGAAGAGATGTGTGCAGCCGGCCGAAGCCACTGAGGTTCCTTTGCACAGGTTTCTCTGAAAATGACAACACGCCAAATTTCagctttttaagattttttttccattttagtcTTAATACGCCCaatattatagattttttttttttttttttgaatgtgCTGTTTCACTACCCTATGAAGATTGGCTCTTTTTTGAGTGGTGAGTCACTATATTAGCTTTTGCATCTACTTGATGTAGGAGGAAAGTACACATTAAAGTAACAAAAGTTGTCTTATTCCTAATTTTAAAGTATGAATTGGTTCTTTCTTTATCTGTCCAGTTCTCCAGTAGCTTTTAATAACTGTTTAATGTGTTCGGAGATatggaaacaaataattattttaatttgattgtttttcattcctGCCCGTCACATTCCAAAGTGCATTGCCCCCTGAAAGGAAATCTAACGCACACCTTTCTCTGCATTGTCTTATGCTAAACAGTTGCTCACAAACATGAAGCTTAGCTTTGCAAACCAAATCAACTTTGAAGtggtaaaagaaaatgcagtgtaACAGAAGGCTAGGTGATTTCCCAACTAATGGTGACAGTTCAAAGGGATTCATTGGATTATAGGACCGATCAGATGTCAAATGATTTACATTTGCTCAGAGCAGATGCACAAAACCCATCTCTGGCATTCTGCTACGTGGGGTTGTCTTTTTCTGTAGTCCTCCACTGTGTACTGCAGATTGTGGTAATATGCTGAGGAATATCTGGCACGTTTCAGTCTTAAAAGCATTCAGCCAGTTTACAAATTGCTAAAATACTGTTCCCAAGTAGAATACATCTTTAAATGTTCTTGCTTTTCTTTCGTAATATTAATTGTTGTACAAAGGCCccttaaagaaaaatgttcagACCAATTGTAATCTGAGACAGATTAAATGAGTTTTACTGTCTGATGTACATGCTCAGATTAACCAATTTTCAAAGCCTTCACTTCGCAGTAGTTTCTTTCTTGCAGAACCAGATTGAAATGAGAATTCATGCACATGGACATCTCTCCATGGAAGATCCCTCGACTTACAAATAATGCAGCAGACAATTCtactgtattgtaaaacattgtGTGAGTCTTAGAATTGAATTTGTTAATTGTCAAAGCTTTAGGTATCGTcttgttaaatttaaatatttgaatattcagTTTATCTAAGGACATTTATGCCCCATGCGTCCGGCTGCGGACCCATAAATGggcgtttccactggctaagcgtccggatgtgtccaggttttgtggccggttaactatGTGCTGCCAGACGTGGCTGTCAGCGTCAGTcaccccactgaggaaatacttctctttcagaagcgATGTGCGCTGGActtgagacagacagggaagagatcagctacattatgtcggaagatataatctcaaatgcCGTATGGGATCatgaagaaattagttttattagcagcacaGAGTAAAATCCACCtacagaaacaatttctgcttacagttaatatccaagtgtattaaaaacgtggatttcacaggaccgttgcagtgccgtgactagttaaaaataaactgaaggataatgatcggatcggtagcagtggattttattaatattttatgaacaactagatggtgttttgtcattttgtgaatgatgtgcaggtctgttgtataacagccctgcagagacaatcagtgtAGGCTTAGTTAATGTGTGCCCACTTacaacatgaatgaatgaatgaatacagcagatctgggtttccctctacaacatgaaggactggtttaataaatgcatccatcagtccataaacaccatgactgagacgtgcacactttagttcaattataacctgctatattgtagctgctgttactggatgattaatcgtgaaacgggtgtattttgtttcaactgtaacttgccctggttaaggatgtctgataagtaaattaaaaataatacagcaaaagttgtaccatttaaaatacaatatctaCTAGCATATATCTtcatgattacaataataaaataataaatagcaaatacttattgttgcacatggaaacgttttcttacggtAAAATGTAATGGTCTGAATAAATGTTGTCTATACAAGTTTAGCTATTCCTagtatctcttaacagaaacgtgtatttattacactttccaatcatgtaaagcataaaataataaacacaaaagtcctttccacatcaggctgtaTCACTCATAGTGTTGTATTCTgtctttaaaactaaaaacaagcaaaacccACAAATGCACAATCGCATCCCATAAGAGGGGATGAACTTCTCAACGGCCTGCTTTTACAAGAAAGCTCTGGGATGTGTCTGGCGCGGCACAGTACGGCACAGGCACTAAAGCCAGTGGAACTGAGGCATTAGTTGCACGTTTTCAATCCTCACATTAAACCTGCACAATCAGACTCCTACctcacaaaacagacacataggaattaaaatagaaaatgtttccAATGTTATTAACGAGCTGAATTTTCTTGTGTGTGCAAAGATGTACACATACGTGTAACATTAGGCCTGCTGCAAAAATTTGTGACACTAAAGGGCAGTTCCACTATGTATAATGGTTCATAATGGGTTGAAGACCTGAATGGAGATACCTTAATTACACAAGGTGGTGACATTATCATGggttttgctaaaaaaaaaaaagaaaaactacataaagcaaaaaaagaatTGCATCTATCCTGTGACTGATAACTTAAGCTGAGGAGGGAATACAGATTTGAAACGATTCACTGCTATTTGGAGTTCCAGATCTGCAAGTTAATGTGGATGGGCAGGTAGTCAACTGAAGCAGATGGAAGttaaccatttctgttttttaaagtcTGCTGCTATCATTTAATACACCACTGAAAATCACAACTGATACCACAAAGTTATTTTGAAACCTTGGAACAATTTTGAGTTCAGATActcaaaacattttccattaatttccAAATATGTTTgccaattttttaaatgtgtataatatgGAGGAATCCAGATTTTAA

Function

symbol description
derl1 Predicted to enable misfolded protein binding activity and ubiquitin-specific protease binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in liver. Orthologous to human DERL1 (derlin 1).

NR:

description
PREDICTED: derlin-1

GO: NA

KEGG:

id description
K11519 DERL1; Derlin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002616 True 4335 mRNA 0.40 8 22909190 22926813

Neighbor

gene id symbol gene type direction distance location
AMCG00002611 has2,LOC107673001,LOC107596747 coding downstream 203445 22694206 ~ 22705745 (-)
AMCG00002610 NA coding downstream 288946 22598624 ~ 22620244 (-)
AMCG00002608 LOC106606163,LOC106595977 coding downstream 340202 22561117 ~ 22568988 (-)
AMCG00002606 LOC106595460 coding downstream 519805 22381544 ~ 22389385 (-)
AMCG00002605 taf2 coding downstream 528398 22354118 ~ 22380792 (-)
AMCG00002615 NA coding upstream 28463 22955276 ~ 22958920 (-)
AMCG00002614 NA coding upstream 32902 22959715 ~ 22968693 (-)
AMCG00002617 NA coding upstream 44692 22971505 ~ 22986571 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding upstream 63440 22990253 ~ 22996520 (-)
AMCG00002627 NA coding upstream 73914 23000727 ~ 23012696 (-)
G124591 NA non-coding downstream 255471 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 310635 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 470461 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 955519 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 983334 21925607 ~ 21925856 (-)
G124669 NA non-coding upstream 70006 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 729171 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 946865 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1484216 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1649352 24576165 ~ 24577131 (-)
AMCG00002596 NA other downstream 1006593 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1230645 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4867617 17933464 ~ 18041573 (-)
G123829 NA other downstream 4919725 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5202901 17690008 ~ 17706289 (-)
G124719 NA other upstream 159181 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 255108 23181921 ~ 23192656 (-)
G124829 NA other upstream 1334752 24261565 ~ 24261823 (-)
G124848 NA other upstream 1364974 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3340239 26267052 ~ 26279621 (-)

Expression


Co-expression Network