AMCG00002620


Basic Information

Item Value
gene id AMCG00002620
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23056782 ~ 23067800 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002620
CTTTTTCCAGAGTTAAAGTTGCTCTACTTTACTGGAGTAGAGGACACCACTTTTGAAAGCGAGGTGGAATTCCCTGTTGTTCAAAGGTGTAAATCTATCGGAGATGGCAGATGAAGAGTATTTTCGTGGTATTTCTAAAATCCCCTATGTGGCTGGTGCCGGAGCAGGAAACGTGTTGGGCTTCAAGTACTACAATGCCCAAGAGGTTCTTCTCGGGAAGACAATGGAAGACTGGCTGAGTTTCTCGGTTTGTTACTGGCACACTTTCCGTGGGACTGGAGCCGATCCCTTTGGATTTCCCACACTGTGTCGGCCATGGGATGATGGGAAGGATTCAATGGAGACCGCTAAGAGGAGAATGCATGCAGCTTTTGAGTTCTTCACTAAATTAGGTGTGAAGTATTACACTTTTCATGACAGAGATGTGGCCCCAGAAGGTTCCACACTGGAGGAGTCTAATAGGAATCTGGTTGAAATCACTGACTTGGCCCTTCAGCTTCAGAAGAAAACGGGCATCAGAGTGCTCTGGGTCACCTGTAACCTCTTTGCACACCCCAGGTACATGAATGGTGCCGCCACCAACCCAGATTCCCATGTGCTGGCCTATGCTGGAGCCCAGGTGAAGAAAGGATTGGAAATAGCCAAGAAACTGGGGGCAGAGAACTTTGCTTACAAAGAAAAGATTGGTCTGAAGTGCCAGTTTCTTATTGAACCCAAGCCTAAAGAACCATGCAGACATCAATATGATTACGATGCCATGAGTGTTATTGGATTTCTGAAGCACTTCGGGCTTGACAGCCACTTCAAGTTAAACATCGAGCCAAATCACACCACTTTGGCAGGACATTCCTACGAGCATGACATAGTCGTAGCTTCGGCGTTTGGAATGCTTGGCTCAGTGGATTCCAATACTGGCTCTCCAGATTTGGGCTGGGACACTGACCAGTTCCCCATGGATATCAAGAATACCACTATGGTGATGAAGAGCATAGTTGAACAAGGTGGGCTGCAGCCGGGCGGACTGAATTTTGATGCCAAAGTGCGCCGGGAGTCCACAGACTTGGAAGACTTGTTCATTGCACATATCGGTGCGATGGATGCCTTTGCACGGGGTCTAAGAAATGCAGAACGCTACCTGAGCTTCAGCACTGGGATTGGTCAGAAAGTGGAGGAGGGCACTGCCACATTGGAGGAACTGGAGGAGTTTACCATGAGAAATGGAGAACCAAAGATCACATCTgggaaacaagaaaaatatgaatcaatTATTAATCATTACCTGTGAAGCAGAGGTATGTCAGATACAGTGGAATATCTGACCAAATTTGATTCCTATCCTGTATAAAATTGGTAGCTGCCATAACTTTCCTCTAGGTCTTTAGTCAGCAATCTTATACAGAAACAGTTGTGGCTTTGCAGTGTAATGTAGACATAAGTATTTGTTCTAGATGTACAAGCAGGTATAAGTAGTGAGAAGCAATTATTAAAGGCTtaacaatgtataaataatactgtATGAAATATTGACCTATATTTAGTTTAGATTGTCATTGATATCCATACACTGTAAAAGCAATTACTAAGAAATGAATATCACTGTTGAGTGTATTTGTTATATGTAATATCAGAGGAATAAAATGCAAGCACTGtacatgaaaatacaaattatatactaATTGATAATGGTCGCagtttttacaaatgtaataaattaaagcattcTCATGAAAAGACATTCCAATCAAAAA

Function

GO:

id name namespace
GO:0042732 D-xylose metabolic process biological_process
GO:0006098 pentose-phosphate shunt biological_process
GO:0009045 xylose isomerase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01805 xylA; xylose isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002620 True 1748 mRNA 0.43 13 23056782 23067800

Neighbor

gene id symbol gene type direction distance location
AMCG00002624 NA coding upstream 1066 23043824 ~ 23055716 (+)
AMCG00002619 NA coding upstream 23197 23028636 ~ 23033585 (+)
AMCG00002621 NA coding upstream 57297 22996873 ~ 22999485 (+)
AMCG00002613 NA coding upstream 104954 22947203 ~ 22951828 (+)
AMCG00002612 LOC103360969 coding upstream 110861 22927289 ~ 22945921 (+)
AMCG00002630 NA coding downstream 339766 23407566 ~ 23407966 (+)
AMCG00002631 NA coding downstream 585172 23652972 ~ 23677437 (+)
AMCG00002635 lrp12,LOC107754924,LOC107714470,LOC107689529 coding downstream 899778 23967578 ~ 23985386 (+)
AMCG00002637 dpys coding downstream 929447 23997247 ~ 24007711 (+)
AMCG00002636 dpys,LOC107686378 coding downstream 951704 24019504 ~ 24036531 (+)
G124668 NA non-coding upstream 44782 23011435 ~ 23012000 (+)
G124667 NA non-coding upstream 53530 23002991 ~ 23003252 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding upstream 54550 23001788 ~ 23002232 (+)
G124658 NA non-coding upstream 65022 22990571 ~ 22991760 (+)
G124601 NA non-coding upstream 144103 22859923 ~ 22912679 (+)
G124687 NA non-coding downstream 150530 23218330 ~ 23276775 (+)
G124740 NA non-coding downstream 354173 23421973 ~ 23436320 (+)
G124750 NA non-coding downstream 538737 23606537 ~ 23606839 (+)
G124770 zfpm2 non-coding downstream 614213 23682013 ~ 23682226 (+)
G124774 NA non-coding downstream 761870 23829670 ~ 23829984 (+)
AMCG00002622 NA other upstream 66618 22987545 ~ 22990164 (+)
AMCG00002573 NA other upstream 2723752 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 3923215 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 3928835 19073693 ~ 19127947 (+)
G123989 NA other upstream 4218251 18832014 ~ 18838531 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 324 23068124 ~ 23180043 (+)
G124689 NA other downstream 84848 23152648 ~ 23290535 (+)
G124769 NA other downstream 610135 23677935 ~ 23681385 (+)
G124863 NA other downstream 1354452 24422252 ~ 24422613 (+)
AMCG00002650 NA other downstream 1694084 24761884 ~ 24776815 (+)

Expression


Co-expression Network