AMCG00002622


Basic Information

Item Value
gene id AMCG00002622
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22987545 ~ 22990164 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002622
CTCCAGTCCCACAAGTCTACTGTCCTGTCTAAGATGAAAACGTTTCGTTCCTTTTCTGGTTATTGCATTGATTAAGCCAAGTATGTTTTGATGAATTATAGTCTTTGACGTGTGTGGTGCAGTTTGTAAGTCATGAAAAAGGCAGACACTTCAAGTGATTATTGCTCTATCGCTCCTTCCGCACAAGACTACGTTTATACGAGCTGCTACTGgTTCCTATATGGAAACAGAAATCAAGCCCTGGAGATAAGCCAGTAATATGGGACTACCATGTTATTCTACTACACGAATGTAACAAGGAACAAAAGAGTTTCATCTATGATCTGGATACCGTCCTACCATTTCCCTGTCCTTTTGATCAGTACGCCAGGGAAGCCCTCCAATCAGATGATTTTATCAATCCAACTTTCAGGAGGAAGCTGCGAGTCATCCCAGCAGATGCGTACTTGAAGAGCTTCGCCTCCGATCGGTCACACATGAGAGATGCCAGTGGGGCTTGGCGCATGCCCCCGCCACCATACCCTTGCATTGAAACGGCAGAGTCGAAGATGAACCTTGATGACTTCATTAGCATGGACTCTCAATTGGGATGTGGGCGTGTCTACACGTTATCAGAGTTTGTGCAACGGTTTGGCAAGACATGATTGCAGTCTGTTTGGAATCATCTTAAAGGAATGTCACTTTCCCTTTTACAAAGCAGCTCATAACCAGCCAAACAACATGCAGTGTCCCTTTTAACACAAAGGACTGAATTATTTGGAACAATTATGGGGTCAACATACTGTACCTCAGATCACCAGCTGGCTTCACAGATGGTACTTACATGGCAAAACATCAAGAACTCATCACCTACTGATGGAACACTACATGGCTACCCCAAAGAGAATGTTGTCCTTTAGACTTATGTCCTTTTATCTGTAATTTATCTTTaaattctattttaaaaaaataataaaaaggaatagAAAATGTGATAA
>TU156235
CACACAATTGCATTAATGTAGGAACGCCAGTCAGCACTGTAAGTTAGTTTCCTTACCGGAGCAATAAACATGTAACACTCCAGTCCCACAAGTCTACTGTCCTGTCTAAGATGAAAACGTTTCGTTCCTTTTCTGGTTATTGCATTGATTAAGCCAAGTATGTTTTGATGAATTATAGTCTTTGACGTGTGTGGTGCAGTTTGTAAGTCATGAAAAAGGCAGACACTTCAAGTGATTATTGCTCTATCGCTCCTTCCGCACAAGACTACGTTTATACGAGCTGCTACTGgTTCCTATATGGAAACAGAAATCAAGCCCTGGAGATAAGCCAGTAATATGGGACTACCATGTTATTCTACTACACGAATGTAACAAGGAACAAAAGAGTTTCATCTATGATCTGGATACCGTCCTACCATTTCCCTGTCCTTTTGATCAGTACGCCAGGGAAGCCCTCCAATCAGATGATTTTATCAATCCAACTTTCAGGAGGAAGCTGCGAGTCATCCCAGCAGATGCGTACTTGAAGAGCTTCGCCTCCGATCGGTCACACATGAGAGATGCCAGTGGGGCTTGGCGCATGCCCCCGCCACCATACCCTTGCATTGAAACGGCAGAGTCGAAGATGAACCTTGATGACTTCATTAGCATGGACTCTCAATTGGGATGTGGGCGTGTCTACACGTTATCAGAGTTTGTGCAACGGTTTGGCAAGACATGATTGCAGTCTGTTTGGAATCATCTTAAAGGAATGTCACTTTCCCTTTTACAAAGCAGCTCATAACCAGCCAAACAACATGCAGTGTCCCTTTTAACACAAAGGACTGAATTATTTGGAACAATTATGGGGTCAACATACTGTACCTCAGATCACCAGCTGGCTTCACAGATGGTACTTACATGGCAAAACATCAAGAACTCATCACCTACTGATGGAACACTACATGGCTACCCCAAAGAGAATGTTGTCCTTTAGACTTATGTCCTT
>TU156236
CACACAATTGCATTAATGTAGGAACGCCAGTCAGCACTGTAAGTTAGTTTCCTTACCGGAGCAATAAACATGTAACACTCCAGTCCCACAAGTCTACTGTCCTGTCTAAGATGAAAACGTTTCGTTCCTTTTCTGGTTATTGCATTGATTAAGCCAAgTTCCTATATGGAAACAGAAATCAAGCCCTGGAGATAAGCCAGTAATATGGGACTACCATGTTATTCTACTACACGAATGTAACAAGGAACAAAAGAGTTTCATCTATGATCTGGATACCGTCCTACCATTTCCCTGTCCTTTTGATCAGTACGCCAGGGAAGCCCTCCAATCAGATGATTTTATCAATCCAACTTTCAGGAGGAAGCTGCGAGTCATCCCAGCAGATGCGTACTTGAAGAGCTTCGCCTCCGATCGGTCACACATGAGAGATGCCAGTGGGGCTTGGCGCATGCCCCCGCCACCATACCCTTGCATTGAAACGGCAGAGTCGAAGATGAACCTTGATGACTTCATTAGCATGGACTCTCAATTGGGATGTGGGCGTGTCTACACGTTATCAGAGTTTGTGCAACGGTTTGGCAAGACATGATTGCAGTCTGTTTGGAATCATCTTAAAGGAATGTCACTTTCCCTTTTACAAAGCAGCTCATAACCAGCCAAACAACATGCAGTGTCCCTTTTAACACAAAGGACTGAATTATTTGGAACAATTATGGGGTCAACATACTGTACCTCAGATCACCAGCTGGCTTCACAGATGGTACTTACATGGCAAAACATCAAGAACTCATCACCTACTGATGGAACACTACATGGCTACCCCAAAGAGAATGTTGTCCTTTAGACTTATGTCCTT

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0070773 protein-N-terminal glutamine amidohydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002622 False 977 mRNA 0.42 5 22987622 22990164
TU156235 True 988 lncRNA 0.44 5 22987545 22990098
TU156236 False 856 lncRNA 0.44 5 22987545 22990098

Neighbor

gene id symbol gene type direction distance location
AMCG00002613 NA coding upstream 35717 22947203 ~ 22951828 (+)
AMCG00002612 LOC103360969 coding upstream 41624 22927289 ~ 22945921 (+)
AMCG00002618 NA coding upstream 81033 22904029 ~ 22906512 (+)
AMCG00002609 NA coding upstream 391257 22564822 ~ 22596288 (+)
AMCG00002607 NA coding upstream 439405 22484287 ~ 22548140 (+)
AMCG00002621 NA coding downstream 6709 22996873 ~ 22999485 (+)
AMCG00002619 NA coding downstream 38472 23028636 ~ 23033585 (+)
AMCG00002624 NA coding downstream 53660 23043824 ~ 23055716 (+)
AMCG00002620 NA coding downstream 66618 23056782 ~ 23067800 (+)
AMCG00002630 NA coding downstream 417402 23407566 ~ 23407966 (+)
G124601 NA non-coding upstream 74866 22859923 ~ 22912679 (+)
G124590 NA non-coding upstream 334603 22652726 ~ 22652942 (+)
G124534 NA non-coding upstream 548764 22436949 ~ 22438781 (+)
G124494 NA non-coding upstream 649587 22333949 ~ 22337958 (+)
G124408 tatdn1 non-coding upstream 1176724 21805620 ~ 21810821 (+)
G124658 NA non-coding downstream 407 22990571 ~ 22991760 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding downstream 11624 23001788 ~ 23002232 (+)
G124667 NA non-coding downstream 12827 23002991 ~ 23003252 (+)
G124668 NA non-coding downstream 21271 23011435 ~ 23012000 (+)
G124687 NA non-coding downstream 228166 23218330 ~ 23276775 (+)
AMCG00002573 NA other upstream 2654515 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 3853978 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 3859598 19073693 ~ 19127947 (+)
G123989 NA other upstream 4149014 18832014 ~ 18838531 (+)
G123807 NA other upstream 5002815 17915436 ~ 17984730 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 77960 23068124 ~ 23180043 (+)
G124689 NA other downstream 162484 23152648 ~ 23290535 (+)
G124769 NA other downstream 687771 23677935 ~ 23681385 (+)
G124863 NA other downstream 1432088 24422252 ~ 24422613 (+)
AMCG00002650 NA other downstream 1771720 24761884 ~ 24776815 (+)

Expression


Co-expression Network