AMCG00002625


Basic Information

Item Value
gene id AMCG00002625
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23033808 ~ 23036859 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002625
GTAGGATTAGTCAGTCTCTTTTCCCATTGCTCATTCTGGCAGCCagcataataaacacatttgcaatgATGCACTGGAACTAAAATAGAGAGCCGGCATTATTTAAGAGGCTCGAGACCACACGGCGAGAACTGTCATTCAACGGCAGCACGGAGCCAACcgccataaaaaaacaattatcccCATCAACCAAGAGTCTTATCCTCCCAAAATGCATTCCTCTAATGCAAAGGATAACCCCTGTCTGTTCAACGCCTATTGTGATGTAAAGGAGAACAATGAGCTGAGGAAGGAGTCCTATAAATCAACGTGGCTGGATCTGGTCATGGAAAGACGCCCTGAGGAAAAGACGACTCTCTTTGAAAATGACATGTCGCGGAAGGAGACCTACGAGAAGAAGCACATCGCTTATTTTCTAGTACAGAGACACCCCGCCCAGAAGATAAAGCTGGGGAGACTGGGGGAGAAGATGAAGGAATACCAGCTTCCATACAAGCTGCCTCTACCCATCTTTGTGCCCAGCAAAGCTGTGTCCTCAAAGGAGCGTGACCGGGCACCCACGCCAGCAGAACTGAAAGGCATCATGGAGTTCGAGAGTGCCTTGTCCAGCGGCCTGagcagagacaggagagaaCTATCTGAGATCAAGAAAGAAATGCCCAAAGTGATCCAGCCTAACCAGTTAAGCTTCAGAGCCTCCAGTCTCATTTCTCCCCCCAATGTGCCTGGCCAGTTTGAGGCTGTCCAAAGAAGCTAGTGCTGGATCTTGGGTCAATTCAATAGGGGGATACATTTCACTCCACTCTCACAGCTTAAAGACTTACATGCTATTAGGATGTAAGTGTTGATGCGATACAAATTCGAGACTAATACGGTgcattgtttattacatttcccACTTTATACACATTCAATTATATGTCATTTGTGTCAGACTGTTATTCTATACACTTTTCATAAGAACTAATGTCTCAGAGCTCCCTGTACAAGCTGCTATGAAGCCTGATGATGGGGTTTCATGCACCGAAGACTCGCATCtcacattttaacattgagAAATTCTTAGAACAGCTATTACAGAGtcattgaaaacacacacatgagaCAAAACATAACAAGGAAAATGCACTTATcttacatttgaatacattatggTGTACCAATAATGTGAATTCTACATCTATCATGATTACTGTCTTAACATGGTAAATATGGGTTTGTTGCATTCAAACTGAaactgtatgtttttgtgtgtgaaaggcaTAGACTTAATGGctattttaatgaaactgaaagattacttaaacagacatttgcattttacaaagcGGAATTTTGGTTTTATGTCTTAATCAGAGACAACTCAGCATTTTTtgcacattcttaaaaaaaagctATACTGAACTACTGTTGTAGTTAATAACCTCAACATCCTTGCATGAAAAGAAGGTGTTATGGTTTTTGAATGCATCACCAGCACAACTTATGTATCAACATACtgccaggaaataaataataataacatagtCATGACAATACGCAAAACCAAccaaaatctaaaaataacagaattgaAGTAGAgtgttgaaatatgtttttcagaaaGTATTGTGAAAGTTCCCAGTGTAAGTGTTTTGAGAGTGTCCGTAATCCTGGTTACTAATCTCATTTAATGACATTAATACTGGATCAGTTGAGTCAGATAAAAAGAAAGTTATGAAATTGTGAAAggttgaaaaagaaagaatttTGTCATGTATATTAGCCTTAGATATAAGCACCTTCAattctttgtttaaatgtgCAATATAGGGGTTTGGATTTATTGTCTGTCTGCAATtccttattataataataacaattatgtGAAATATTCTTTGTGAGCAATTCATCTTCAAGGGAAGAACAGTTACCTAATAAAgctattcaaataatttaatttttttattgaatacattttcgtCTGTGAAAGATATTATTTTGatctttaactgaaattgattttacttgaacaatatattataaaaggtttgtccaaataaaataataactacaaATAAGTGATTCACTGTGATAACAAACACTCAGCCTGTACAAAGTCAATTCCCCTTGCACTATGGTACAGAGGGGTGATACAGATGCACAGTTGAAGACCACAATGATCTGacttatgaatttattttttatctgcagCATAAACTGTGGCCACCTTGTGGAGAAAAAACATAGCAGTGTGGTAGTGAAGCGCCCCCTCTTCACAGTGCTGTGATTCAGCTATAATCTGGTTAAATCTGAATGTTACAATACATCCTTCCTTTTCAATACCTTATGAAATGGGAAATAATCCGGccattagaagaagaaaaaacacatcctGAATACAAATAGCAttatggaaacaaataaaataaacttgctttataaacaaatgttttaaatctaaatcaCTACACATTAACCTTAAATTATGTACCTTATTTATACACGTTCAATTATAGCAATTtggatgaagaaaaataaaaacatgttgg

Function

GO: NA

KEGG:

id description
K19879 TCAP; telethonin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002625 True 2531 mRNA 0.37 2 23033808 23036859

Neighbor

gene id symbol gene type direction distance location
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding downstream 5461 23018946 ~ 23028347 (-)
AMCG00002627 NA coding downstream 21112 23000727 ~ 23012696 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding downstream 37288 22990253 ~ 22996520 (-)
AMCG00002617 NA coding downstream 47237 22971505 ~ 22986571 (-)
AMCG00002614 NA coding downstream 65115 22959715 ~ 22968693 (-)
AMCG00002632 NA coding upstream 384939 23421798 ~ 23471546 (-)
AMCG00002633 zfpm2 coding upstream 641083 23677942 ~ 23682594 (-)
AMCG00002634 NA coding upstream 740830 23777689 ~ 23787869 (-)
AMCG00002638 NA coding upstream 1003482 24040341 ~ 24045879 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding upstream 1014760 24051619 ~ 24065028 (-)
G124669 NA non-coding downstream 34700 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 380089 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 435253 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 595079 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1080137 21941177 ~ 21953671 (-)
G124765 NA non-coding upstream 619125 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 836819 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1374170 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1539306 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 1911291 24948150 ~ 24950358 (-)
AMCG00002596 NA other downstream 1131211 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1355263 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4992235 17933464 ~ 18041573 (-)
G123829 NA other downstream 5044343 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5327519 17690008 ~ 17706289 (-)
G124719 NA other upstream 49135 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 145062 23181921 ~ 23192656 (-)
G124829 NA other upstream 1224706 24261565 ~ 24261823 (-)
G124848 NA other upstream 1254928 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3230193 26267052 ~ 26279621 (-)

Expression


Co-expression Network