AMCG00002626 (sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682)


Basic Information

Item Value
gene id AMCG00002626
gene name sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23018946 ~ 23028347 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002626
AGATTCAAAGATGGTACATCTGTAGTATGAACGGAAGAGAGGATGTGGGTTTGTTCTGGCGCATGCGCATTGAACCGTGTAGCGAACATCATGGCTGCGCTGTGTGCTGCTTCTCGGATTCTTGCGAGGAGAGTCCTGTCATCTAAAACTCTCCCAGCATGCTACCAGGGCACTTCTCGGACGTTTCACTTCACCGTCGATGGGAAAAAGGCTGCTAAAGTTTCAGATGCAatcTCTACGCAGTACCCTGTGGTAGACCATGACTTTGATGCAGTTGTGGTGGGGGCAGGTGGCGCCGGATTGCGAGCTGCATTTGGGTTGTCAGAGGCTGGTTTCAACACTGCCTGCATTACAAAGCTCTTCCCTACAAGATCTCACACTGTGGCAGCCCAGGGTGGTATTAATGCAGCCCTGGGGAACATGGAAGATGATGATTGGAGGTGGCACTTCTATGATACAGTGAAGGGATCTGATTGGCTGGGAGATCAGGATGCCATCCATTATATGACCGAACAGGCCCCAGCAGCAGTTGTTGAGCTGGAAAATTTTGGGATGCCATTCAGTAGGACAGAGGACGGGAAGATTTACCAGCGTGCTTTTGGGGGACAGAGCCTGCAGTTTGGGAAGGGGGGCCAGGCTCACAGGTGCTGCTGTGTGGCTGACCGGACTGGACATTCACTGTTACACACACTCTATGGGAGGTCCTTGAAATATGACACCAGCTACTTTGTGGAGTATTTTGCTTTGGATCTTCTGATGGAAAATGGCGAATGTAGAGGAGTCATAGCTCTCTGTATGGAAGATGGATCAATCCACCGGTTCAGAGCAAAAAACACTGTCATAGCTACAGGGGGTTATGGCCGAACCTTTTTTAGCTGCACGTCGGCCCACACCAGCACAGGGGACGGTAACGCCATGGTCACCAGAGCTGGCCTGCCTTGCCAGGACCTGGAGTTTGTGCAGTTCCACCCAACCGGTATTTATGGGGCCGGATGTCTGATCACAGAAGGCTGCCGAGGTGAGGGGGGTATTCTCATTAACAGCGAAGGAGAGAGGTTTATGGAGCGGTATGCCCCTGTCGCGAAGGACCTTGCCTCTCGGGATGTCGTGTCCCGTGCCATGACCATTGAAATCCGAGAAGGAAGAGGCTCTGGGCCTGACAAAGATCATGTGTACCTGCAGCTCCATCACCTCCCTCCCCAGCAGCTTGCCACACGCTTGCCTGGGATCTCGGAGACCGCCATGATCTTTGCTGGAGTTGACGTCACCAAGGAGCCCATCCCAGTTCTTCCTACTGTTCACTACAACATGGGAGGAATCCCTACCAACTACAAGGGCCAGGCCATTACCTACGAGAACGGTCAAGATAAAGTGGTGCCAGGACTGTACGCCTGCGGAGAAGCTGGCTGTGCCTCTGTCCACGGGGCCAACCGGCTCGGCGCCAACTCCCTCCTTGACTTGGTGGTGTTTGGCCGTGCCTGCGCCCTGACCATTGCAGAAAACTTCAAGCCTGGAGAAACTCTTCCAGACCTCAAATCAAATGCTGGAGAGGAGTCTGTAGCCAACTTGGATAAACTGAGATTTGCGAATGGCAACATTAGAACGTCTGAGATCCGTCTCAACATGCAGAAGACAATGCAGGCGCACGCAGCGGTGTTCCGCACCGGCCCAGTCCTCAAAGAAGGATGTGAGAAAATTGATTCCATCTTCAAATCGATGGCAGACATCAAGACATTTGACAGAGGCATCGTGTGGAACACTGACCTGGTCGAGACTCTGGAGCTGCAGAATCTGATGCTGTGCGCCCTGCAGACCATCAACGGTGCCGAGGCACGGAAGGAGAGCCGGGGTGCGCACGCCAGAGAGGACTTCAAGCAACGCATGGATGAATACGACTATAGCAAACCCCTACAGGGCCAGCAGAAGAAGCCCTTCAGCGAGCATTGGAGAAAGCACACCCTGTCTTACGTGGATGCCAGTGGGAAGGTGACTCTTAAATACCGGCCTGTGATTGACCATTCATTAAGTGAGGAAGAGTGCTCCGCCATCCCCCCTGCCATCCGCTCCTACTGAGCTGCCAAACTGTAACTTTGCATTAGTCAGAACTTGTAACAGCGGATAAatgttggattttgttttgttcttgtactgtactatactggcGAATACTACACATAGGAATGTTACTTATTTCCTTAGAAGACATAAAGTACTATTATGGTATTCCGTGCATTGTGgtttaaagtatattattgATATCTGATTTGAATTATTCTAAtgtagaataaaacaaagttaaacTGTATGCAGACATTGGAATACTTGGAGCAATCGTGGTTAAAAAGCTGCCACCTTGAGAAAAGCAAAACcttgtatgtaaataaaatacatttttcactcaTTCTCGCCTTTCTTAATGggataatacaaatgtatttaaagtggTGTGTATCCTGCATGCTTACTGCTTactggatttatttaaaatctcaaTAAAAAGGCTACGAATCTTCCTTTATGCCTGACATTGTGTGCTTGGGCAGTGTTGTGGAAATGTACATAAACATGCAGAGAGATGGgctgaaatataatttatgtaagTATTTACCAAT

Function

symbol description
sdha Predicted to enable electron transfer activity; flavin adenine dinucleotide binding activity; and succinate dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone. Predicted to act upstream of or within electron transport chain and tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Is expressed in several structures, including adaxial cell; alar plate midbrain region; eye; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Leigh disease; dilated cardiomyopathy 1GG; mitochondrial complex II deficiency; and paraganglioma. Orthologous to human SDHA (succinate dehydrogenase complex flavoprotein subunit A).

NR:

description
LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006105 succinate metabolic process biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0008177 succinate dehydrogenase (ubiquinone) activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002626 True 2612 mRNA 0.49 15 23018946 23028347

Neighbor

gene id symbol gene type direction distance location
AMCG00002627 NA coding downstream 6250 23000727 ~ 23012696 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding downstream 22426 22990253 ~ 22996520 (-)
AMCG00002617 NA coding downstream 32375 22971505 ~ 22986571 (-)
AMCG00002614 NA coding downstream 50253 22959715 ~ 22968693 (-)
AMCG00002615 NA coding downstream 60026 22955276 ~ 22958920 (-)
AMCG00002625 NA coding upstream 5461 23033808 ~ 23036859 (-)
AMCG00002632 NA coding upstream 393451 23421798 ~ 23471546 (-)
AMCG00002633 zfpm2 coding upstream 649595 23677942 ~ 23682594 (-)
AMCG00002634 NA coding upstream 749342 23777689 ~ 23787869 (-)
AMCG00002638 NA coding upstream 1011994 24040341 ~ 24045879 (-)
G124669 NA non-coding downstream 19838 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 365227 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 420391 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 580217 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1065275 21941177 ~ 21953671 (-)
G124765 NA non-coding upstream 627637 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 845331 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1382682 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1547818 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 1919803 24948150 ~ 24950358 (-)
AMCG00002596 NA other downstream 1116349 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1340401 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4977373 17933464 ~ 18041573 (-)
G123829 NA other downstream 5029481 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5312657 17690008 ~ 17706289 (-)
G124719 NA other upstream 57647 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 153574 23181921 ~ 23192656 (-)
G124829 NA other upstream 1233218 24261565 ~ 24261823 (-)
G124848 NA other upstream 1263440 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3238705 26267052 ~ 26279621 (-)

Expression


Co-expression Network